Ssub012396.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sarcophaga subvicina
Gene Symbol
sip1
Assembly
GCA_936440885.2
Location
CAKZFJ020000115.1:684018-686857[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.7e-95 4.7e-91 306.1 14.3 1 275 413 683 413 683 0.99
2 2 0.26 4.6e+03 -2.1 0.0 243 261 696 714 688 730 0.57

Sequence Information

Coding Sequence
atGTCGGACCATGAATACGAACGTTTCGAAATAACGGATTATGATTTGAAAAACGAATTCAATACAATGAGACCACGAAGATACCTAAGCAAAGAGCAGCAAATTTATGGAATCTGGGCTAGTGATAGCGACAACGATGACAAAAAATCTTCCCGCAGACGCCGTGGTACAACTGGCATTCCTAAAGGCCGTTCGGGCAATAAAGACTATACCGCACCCGTAAATTTTGTGGCCGGTGGCATACAGCAGTCGGGTAAGAAGAAGGATGACAGTGCCGATAGTGACGAAAGTAGTCCTATAACCGATGAAGAGGACACAATGCCAAGCCGGCCTGGTTTTGGTGCTGGAGCCAAGCAAAATTTAATGGATGTAGATTCGGCTAATACTAGTGAAGATTCTGAGGGAGACATGGACGTTGGAAATAACCAACAAACAAGCCAAAAACCTTCGTACTATAATCCCAATCAAACAGGCAATTCTAAACTGGGAGCCTGGGAACAGCACACTAAGGGTATAGGAGCTAAACTATTGCTTCAAATGGGTTATAAACCAGGCAAGGGTCTGGGCAAAGATCTTCAGGGCATTTCCCAGCCTATAGAGGCTCGTGTACGCAGGGGCAGAGGTGCTATAGGTGCTTATGGTTCGGAAAAACCTGCCAGTGTGGCTGGTAAAGAGCATACGCCACAAATTGATGAGGATGCCCGTGAGGCCAAAGAGTTTAGGGAGAAgctaaacaaatggaaaaagggaggcgataataaacaggATAAAGCTCCCAAGCGTTACTACTACAGATCGGTGGAGGAGGTATTGGAAAAGGGCAAGACCACCAATTACTTTATCACCGACAAAATGAGcaaaaaactAGGCAATGTACCCGTAATCGATATGACTGGTCCTGAGAAACGTGTATTAAGTGGCTATCATGCCATAGGCCAAACCAGAGTCATGGATGAAGATCTATATGAGTTTAGTGAACAACCCAAAAGGTCCACTGCAACTGCCTTTGCTATGCCTGAACTTATGCACAATCTGTCCTTCATAGTGGATATGTGCGAAAAGGATATTATTTCCTTGGACTCTGCTCAAACGGCTGCTGTCGATGGCCGTATTGTTTTGGAACAGGAAAAGAAACAATTGGAACAAATTGTTCAATTCGAAACTGCTCATATACGTACTCTAGATAGAGTATTAAAACTAGTGGATGAGCTAACCGCACCTGATTCCCAATTGGACTTGGACAGGGCAGAGAAAATCTTTCTGGAATTACAGCAAAACTATGCACCCGAGTATCAGCAATTTGGCATAGGCGACTTGGCTGCTGGCATTATAGCGCCATTGCTAAAGAACCATTTAGCGGAATGGAAACCTTTGGAGAATCCCACTTTGTATGTGGACTTAATTAAGAAATGGCGTGTAATTTTAGAGGGCCATAATGCTAGGCTAGAAGATAATCGTTCGAATGTCTTTGATCCTTATTCCTCTTTGATATGGGCTGGCCTGATACCCAGTTTTCGTTCCTGTGCTGAATTTTGGGATGCTAAACAGCATCATACCATGGCTGCTCTGTTGGATTGTTGGGCTCCCATGTTTCCCAGCTGGATATTGGATTCTGTGCTAGAACAGCTTATATTGCCACGCTTAAGTTCAGCGGTTAAAAATTGGGATCCTTTAACGGATACTGTGCCCATACATATGTGGATTTTACCTTGGAACTCGATATTGGGCCACAAAATGGAGGAGTTTATATATCCTACCATCAGAGAAAAATTGGGTAATGCTTTACAGGCCTGGTCGCCACAAGATCGTTCGGCAAGGGCCATGTTAACACCCTGGAAGGGTGCTTTTAACGAGGAAGAAATGCAAGTGTTCCTATTGCAGCATATCATACCAAAATTGCAAATGGTTTTAACAGAGTTTGTTATTAATCCTTTGCAACAGGATTTGGAACCCTGGAATCAAGTATGGGAATGGCGTGAACTCATACCCACAATACAACTGGCACAACTGTTGGATAAATTCTTCTTTCCCAAATGGATGCAGGTATTGGTCTTGTGGCTTAATCAATCACCGGACTATACGGAAATATCCCGCTGGTATACGGGCTGGAAGAGTATGTTCTCCGAGGAGATTTTAAGGGAACCCAATATAAAAGAACATTTGAGAAGGGCTCTCGAAATGATGCACAGGGCTACGGATCAGTTAAGTAATCCGGTTAACATTGGACCGGTTGGCGGCAGTATAGGTGCCAATATACACGCTACACCAGTGCCGCCCCCGccacaaccaccaccaccacctccatCCCTATTGGATCTGCAAGTGCCAGCTCCGGCACAGCTGGAATTCAAGGAGTTGGTTTCACGTAAATGTGCGGAACGGGGAGTACTGTTTGCGCCTCTTCCGGGGCGCCGAGAATTGGGCAAGCAAATCTATCGTGTGGGAAAATTGTATTGCTATATTGATCGTAATGTTTGTATGATAAGCGATGCTTCGTTTAAGAACTGGATGCCGACACCTTTGCAGCCCATGATAGATCGGGCCATAACGGGCATATTAAATTGA
Protein Sequence
MSDHEYERFEITDYDLKNEFNTMRPRRYLSKEQQIYGIWASDSDNDDKKSSRRRRGTTGIPKGRSGNKDYTAPVNFVAGGIQQSGKKKDDSADSDESSPITDEEDTMPSRPGFGAGAKQNLMDVDSANTSEDSEGDMDVGNNQQTSQKPSYYNPNQTGNSKLGAWEQHTKGIGAKLLLQMGYKPGKGLGKDLQGISQPIEARVRRGRGAIGAYGSEKPASVAGKEHTPQIDEDAREAKEFREKLNKWKKGGDNKQDKAPKRYYYRSVEEVLEKGKTTNYFITDKMSKKLGNVPVIDMTGPEKRVLSGYHAIGQTRVMDEDLYEFSEQPKRSTATAFAMPELMHNLSFIVDMCEKDIISLDSAQTAAVDGRIVLEQEKKQLEQIVQFETAHIRTLDRVLKLVDELTAPDSQLDLDRAEKIFLELQQNYAPEYQQFGIGDLAAGIIAPLLKNHLAEWKPLENPTLYVDLIKKWRVILEGHNARLEDNRSNVFDPYSSLIWAGLIPSFRSCAEFWDAKQHHTMAALLDCWAPMFPSWILDSVLEQLILPRLSSAVKNWDPLTDTVPIHMWILPWNSILGHKMEEFIYPTIREKLGNALQAWSPQDRSARAMLTPWKGAFNEEEMQVFLLQHIIPKLQMVLTEFVINPLQQDLEPWNQVWEWRELIPTIQLAQLLDKFFFPKWMQVLVLWLNQSPDYTEISRWYTGWKSMFSEEILREPNIKEHLRRALEMMHRATDQLSNPVNIGPVGGSIGANIHATPVPPPPQPPPPPPSLLDLQVPAPAQLEFKELVSRKCAERGVLFAPLPGRRELGKQIYRVGKLYCYIDRNVCMISDASFKNWMPTPLQPMIDRAITGILN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01313000;
90% Identity
iTF_01313801;
80% Identity
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