Scar026379.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sarcophaga carnaria
Gene Symbol
sip1
Assembly
GCA_958299815.1
Location
OY283152.1:112644453-112647301[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.5e-95 4.6e-91 306.3 15.8 1 275 413 682 413 682 0.99
2 2 0.15 2.8e+03 -1.3 0.0 158 188 695 724 687 733 0.54

Sequence Information

Coding Sequence
ATGTCGGACCATGAATACGAACGTTTCGAAATTACGGATTATGATTTGAAAAACGAATTCAATACAATGAGACCACGAAGATACCTAAGCAAAGAGCAGCAGATTTATGGAATCTGGGCTAGTGATAGCGACAATGATGACAAAAAGTCTTCTCGCAGACGCCGTGGTTCAACTGGCATTTCTAAAGGCCGTTCGGGCAAAAAAGACTATACCGCACCCGTAAGTTTTGTGGCCGGTGGCATACAGCAGTCGGGTAAGAAGAAGGATGACAGTGCCGATAGTGACGAAGGAAGTCCTATAACCGATGAAGAGGACGCAATGCCAAGCCGGCCTGGTTTTGGTGCTGGAGCCAAGCAAAATTTAATGGATGTAGATTCGGCTAATACTACTGAAGATTCTGAGGGAGACATGGACGTTGGAAATAACCAACAAACAAGCCAAAAACCTTCGTACTATAATCCAAATCAAACAGGCAATTCTAAACTGGGAGCCTGGGAAAAGCACACTAAGGGTATAGGGGCTAAACTATTGCTTCAAATGGGTTATAAACCAGGCAAGGGTCTGGGCAAAGATCTTCAGGGCATTTCCCAGCCTATAGAAGCCCGTGTACGCAGGGGCAGGGGTGCTATAGGTGCTTATGGTTCGGAAAAACCTGCTAGTGTGGGTGGTAAAGAGCATACGCCACAACTTGATGAGGATGCACGTGAGGCTAAAGAGTTTAGGGAGAAGCTAAACAAGTGGAAAAAGGGAGGCGATAATAAGCAGGATAAAGCCCCCAAGCGCTATTACTATAGATCGGTGGAAGAGGTATTGGAAAAGGGCAAGAAcaccaattattttattaccgACAAAATGAGcaaaaaactAGGCAATGTACCCGTAATCGACATGACTGGTCCTGAGAAACGTGTATTAAGTGGCTATCATGCCATAGGCCAAACCAGAGTCATGGATGAAGATCTATATGAGTTTAGTGAACAGCCCAAAAGGTCCACTACAACTGCATTTGCTATGCCTGAACTTATGCACAATCTGTCCTTCATAGTGGATATGTGCGAAAAGGATATTATTTCCTTGGACTCTGCTCAAACGGCTGCTGCCGATGGCCGTATTGTTTTGGAACAGGAAAAGAAACAATTGGAACAAATTGTTCAATTTGAAACTGCTCATATACGTACTCTAGATAGAGTATTAAAACTAGTGGATGAGCTAACCGCACCTGATTCCCAATTGGATTTGGACAGGGCAGAGAAAATCTTTCTGGAATTACAGCAAAACTATGCCCCCGAGTATCAACAATTTGGCATAGGCGATTTGGCTGCTGGCATTATAGCGCCATTGCTAAAGAATCATTTAGCGGAATGGAAACCTTTGGAGAATCCCACTATGTATGTGGACTTAATTAAGAAATGGCGTGTAATCTTAGAAGGTCATAATGCTAGGCAAGAAGATAATCGTTCGAATGTCTTTGATCCTTATTCCTCTTTGATATGGGCTGGCCTCATACCTAGTTTTCGTTCCTGTGCTGAATTTTGGGATGCCAAACAGCATCATACCATGGCTGCTCTGTTGGATTGTTGGGCACCTTTGTTTCCCAGCTGGATATTGGATTCTGTGCTAGAACAGCTTATACTGCCACGCTTAAGTTCAGCTGTTAAAAATTGGGATCCTTTAACGGATACTGTGCCCATACATATGTGGATTTTACCTTGGAACTCGATATTGGGCCACAAAATGGAGGAGTTTATATATCCTACCATCAGAGAAAAACTGGGTAATGCTTTACAGGCCTGGTCGCCACAGGATCGTTCGGCAAGGGCCATGTTAACACCCTGGAAGGCTGCTTTTAATGAAGAAATGCAAGTGTTCCTATTGCAGCATATCATACCAAAATTGCAAATGGTTTTAACCGAGTTTGTTATTAATCCTTTGCAACAGGATTTGGAACCCTGGAATCAAGTATGGGAATGGCATGAACTCATACCCACGATACAAATGGCACAACTGTTGGATAAATTCTTCTTTCCCAAATGGATGCAGGTATTGGTCTTGTGGCTTAATCAATCACCGGACTATACGGAAATATCCCGCTGGTATACGGGCTGGAAGAGTATGTTCTCCGAGGAGACTTTAAGGGAACCCAATATAAAAGAACATCTGAGAAGGGCTCTCGAAATGATGCACAGGGCTACGGATCAGTTAACTAATCCGGTTAACATTGGACCGGTTGGCGGCAGTATAGGTGCCAATATACACGCTACACCAGTGCCGCCCCCGccacaaccaccaccaccacctccatCCCTATTGGATCTGCAAGTGCCAGCTCCGGCACAGCTGGAATTCAAGGAGTTGGTTTCACGTAAATGTGCGGAACGGGGAGTACTGTTTGCGCCTCTTCCGGGGCGCCGAGAATTGGGCAAGCAAATCTATCGTGTGGGAAAATTGTATTGCTATATTGATCGTAATGTTTGTATGATAAGCGATGCTTCGTTTAAGAACTGGATACCGACACCTTTGCAGCCCATGATAGATCGGGCCATAACAGGCATATTAAATTGA
Protein Sequence
MSDHEYERFEITDYDLKNEFNTMRPRRYLSKEQQIYGIWASDSDNDDKKSSRRRRGSTGISKGRSGKKDYTAPVSFVAGGIQQSGKKKDDSADSDEGSPITDEEDAMPSRPGFGAGAKQNLMDVDSANTTEDSEGDMDVGNNQQTSQKPSYYNPNQTGNSKLGAWEKHTKGIGAKLLLQMGYKPGKGLGKDLQGISQPIEARVRRGRGAIGAYGSEKPASVGGKEHTPQLDEDAREAKEFREKLNKWKKGGDNKQDKAPKRYYYRSVEEVLEKGKNTNYFITDKMSKKLGNVPVIDMTGPEKRVLSGYHAIGQTRVMDEDLYEFSEQPKRSTTTAFAMPELMHNLSFIVDMCEKDIISLDSAQTAAADGRIVLEQEKKQLEQIVQFETAHIRTLDRVLKLVDELTAPDSQLDLDRAEKIFLELQQNYAPEYQQFGIGDLAAGIIAPLLKNHLAEWKPLENPTMYVDLIKKWRVILEGHNARQEDNRSNVFDPYSSLIWAGLIPSFRSCAEFWDAKQHHTMAALLDCWAPLFPSWILDSVLEQLILPRLSSAVKNWDPLTDTVPIHMWILPWNSILGHKMEEFIYPTIREKLGNALQAWSPQDRSARAMLTPWKAAFNEEMQVFLLQHIIPKLQMVLTEFVINPLQQDLEPWNQVWEWHELIPTIQMAQLLDKFFFPKWMQVLVLWLNQSPDYTEISRWYTGWKSMFSEETLREPNIKEHLRRALEMMHRATDQLTNPVNIGPVGGSIGANIHATPVPPPPQPPPPPPSLLDLQVPAPAQLEFKELVSRKCAERGVLFAPLPGRRELGKQIYRVGKLYCYIDRNVCMISDASFKNWIPTPLQPMIDRAITGILN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01313000;
90% Identity
iTF_01313000; iTF_01315496;
80% Identity
-