Rnym013618.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhopalosiphum nymphaeae
Gene Symbol
Mblk-1
Assembly
GCA_036289425.1
Location
JAZAQC010000016.1:10166714-10177996[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 6e-17 1.1e-13 51.1 0.0 1 39 349 388 349 392 0.94
2 2 1.7e-18 3e-15 56.1 0.0 1 43 911 954 911 956 0.95

Sequence Information

Coding Sequence
ATGTTCACAGGGTTGGAAAGGATCGCTGAAGAGTTAATGGGAAGAAGAAAATGGCACCAGTATCAAGACATTTTggcgaaaaattatttactggaAGAGGAATTGATGGATCGGAGAGAATGGGTTCCCGTCAAAACGTGTAATTCGTGTGATGTGAACACAGACCTGAGTATAGCGGATCACTCACCTGCAGAACTGGAGCCATCGTCTGAAACGGGAAGCTTGAGCGGCGGCAGTCGCAGCGCAGAGAGTCCGGAACCGGAACCGGGCAGGCGGTCGTCCTCCACACCGCCGACGGCGGCATCAGAGCCGTGTTGCGCCGATGACCGatcgccgccgccaccgccactGCTGTCGCTGCCCAACCCTACGGCCGCCGCTGCCGCCGCCGCAATGGCCGCGGTCGCGTCACTGAACAactcgtcgtcgtcatcgacCACGACGACGATGACACCGGCTGGCGGGCCACCGTCGCCCAGCGCGCTGGAGGCCGCGGCCGCCGGCCTGCCGAAATGGCTTTTGGCCGCCGCCACGCTGAGGCTACAAGAGACGACGGCCGCTGCAGCGGCGGCAGCAGCCGCAGCCGCGGCCGCGACATCAGCGGTCACCGGATGCAAGTCGCCTCCCACCCACCGTCACCAtcaacagcagcagcaacaacaCCAGTCGCTCGATCAACCGCTTGATCTCAGCGCCAagagcaacaacaacaacaacaacaacaacaacgtcAGCGGTTCGGCCGGCAACGCTTCGTCGTCGTCCGCGTCGTCCACGCCGTCGTGTCCGAGCTCGTCGTCTACGCCGTCGTCCGAGCTGAAAAACGTGCCCGCCACCGTCGCGGCCGCCGTCGCCATCAACCCGTTCACGTCAGATCTCATCGCCACGGACATGGTGAACCAGCTGCGCGACCTGTTACCGAGCACGTCCACGTTCCTACCGCACCAAACGCTCAACGTGCCCATGGTAACCGTCAACAACCGGAACGCGTTTAAGACGAGGACGGTAAAACAGCCAAGTCACATAGCCGGTCGGAAGACTTACACGGAGGATGAGTTGCAAAAAGCGCTTCGGGACATCCAGAGCGGAAAGTTGGGCACGAGGCGGGCGGCCGTCATATACGGCATACCCAGGTCGACGTTACGGAACAAAGTGTACAAGATGGCGCTGGAACGGGACAGCGGAAGCGGTGCCGGCGGTGCAGTGGCTATCAGAGACACGTCGGCCGGCGGGGACGACCCGTCCAACGGACAAGCGGCCGAGCTGTTGCCGTTGCTAGCCGAAGAAGATGACGACGAGGACAGGGAAACGACGTCCGTCGAAGACGAATGCACACACAGACCGGCGACGGATGGTAAGGACCTCCACCCCACCGCACATCAACAACAACCACCGCCGCAGCACCGCGGCCAGCAGCCCAGGacgccgtcgtcgtcgttcaTGACGGTCGAAGACTTGTTGCGGATCACGGCGGAACAACAGCAACAGGCGGCTGTGGCCATGCCCAACGCCGAGACGCTCCGACTGTTCCTACAACACTACGCCAACAACAAACTGCTGCAGAACAGACCGGAACCACATTACCGCGGGCGCGACGGACCGGTGGACGGCCGATCGCCATCGCCACCGTCTACAGCCGCTGCCACCAGGTTTCCGCTACCCATCACTGCGGACCTATGGCCGGCGGCTGCGGCGGCTGCAGCAGCGGCGGCAGCCTTAGACCCTCAACACATGGGAACGTATCTGACGCACTTGTTGTCCTCGTCGGTGACAGCCGCGTCGCCTACGGGCGGATTGGCATCGCCGCACTTGCAATCGCATGGAAGTCCACCACccccgccaccgccgccgcctccGCAGCAGCAGCACATCTCAGCGGCTCACCACCAGCAAGAATTACTCAAAGATTTCACCGTCAAGGACTTGATGCGTAAGATACTGGACGAGGAACAACAGCAGCAGCTGCAGCACTTGCAGCAACAGTACAACAACAAATTAGTAGACCACAGGCGGTGGTCGTCGAACGGTTGTAGTTCGTCTGAACCGATGGACACGGGTCGCAGCAACGACGATGACTCGAACCCGTCCAACGTCATCCTGAGAATACCATCGTACAAGCCAGTTCCCGGTAGTAAGGGTGGCGATTATGAGTCAGTGGCGTGTGCCAGGGACATCTTGTCTCCCGGACGAGCCAACAGCGCCCGGAGTGATTCGTCGTCGCCGCCATCGTCGTCCGGTGGCGGTATTGGTGGCAAACATCCGGTCAATCTGAGAGATGTGATCGCCAAGAGTATCACGCACAGGTATCAGTCCGACCCGCCGCTCCCGCCGCCCATACCAGCCGTTGAGTCGTTCGCCCGGGCCTATCATCAGTACCAGCAACAACACCATCATcaccaacaacaacaacaacaacagcacCACCATCATCATctgcagcaacagcagcatGGCATACCCACTTCTTTCGGTACTGGCAACTCGGTCATCAGGAaccacaacaacaataatttgcAGCAGGATGATTGCCGTAAACGAGTGCCGACGCCCACCAACAAATCATCGTCGGTCATAACGCCTTCGTCCGCCGGCGCCGGGTTCCACACAGGCGGCTCttcatcgtcgtcgtccaACTCGGCGTCAGCCGCCGCGGCGGCGGCTGCGGCTGCAGCAGCGGCAGCGGCCGGTGGCAAGGGTACCAGGCCCAAGCGGGGTAAGTACAGAAACTACGACCGGGACAGCCTAGTGGAAGCTGTGCGAGCAGTGCAACGTGGCGAAATGAGCGTGCACCGGGCTGGATCCTATTACGGAGTGCCGCACTCTACGCTCGAGTACAAGGTCAAGGAGAGACATCTGATGCGGCCCAGGAAACGGGAACCCAAGAACCCTCCGTCCTCGTCGTCAGTGTCCGCGGCAGTTGTCGCCGATCACCATTCAGACCGAAAAAAGTCGTCGTCCGATCTGTCGTCATCGCCGTCGGTCGTCCGGCCGGCCGACAAGACCACTACCACCTCGTCGTCCTCGTCGTCTGCCACCCCACCGGCCATAAAACTGCCCGCGCACGTCCAGTTTCCGGCGCAACAACAACCACCTGCGCTTCAAACGCCCAACGGGCTCAAGATGTTCGATGCCGCAGGCCCGGTGGGTCCGTACCAGCCGTCGTTTCCGTTCTGGGCTCCGAGCCCGTTCCACGTGCCAATGGAGTTCCAGCGTAATCCGGTGTCGTTCCCGCCCATGTCGATGATGCAACGGATGCAGGCCGAGTCACGGCTACACCACCACCAGGCCGCGGCCGTGGCTGCTGCGTCCATCGCCAGCTTGGGCAAAAACGCCCGCGAGGTAGCTGAAAACCTGTACGACGGAACGGATAACGGTAGTTTCCTGGACGGTATTATCAGGTCTAGTCTGGAGACGGGGCTCAAGTCGGCGGCTACTATGGCAGCCGTCCAAGCCGCTGCTAAGAACGCCATGAAGGGAGGTGGAAGAGGTAGAGACGGCAGTGACGGCGACGACTGCAGTCCGAAAGGTTCGCCGCAAGTGACTGGGACCGAAGATGACGGTGAAGACCATCTGGAGGACCGAGCGACTACGCCACAGTCGTGCCAGGATTCGGCCGGGGACAGCGACGACGAGAAGTCACGGCTCGAGTCTCCGGACGGACAAGAACATCGCCGCCGTCAACGTCAACAGCGGCACGAAGATTCCGAACACGAAACGGTCGCAGATCGGGCCTCCACCGCTTCGCCCGAACGCGCAACCGAAACGGAAAACGACGATGATGACATCGCCGACGCTGTCGTCTGA
Protein Sequence
MFTGLERIAEELMGRRKWHQYQDILAKNYLLEEELMDRREWVPVKTCNSCDVNTDLSIADHSPAELEPSSETGSLSGGSRSAESPEPEPGRRSSSTPPTAASEPCCADDRSPPPPPLLSLPNPTAAAAAAAMAAVASLNNSSSSSTTTTMTPAGGPPSPSALEAAAAGLPKWLLAAATLRLQETTAAAAAAAAAAAAATSAVTGCKSPPTHRHHQQQQQQHQSLDQPLDLSAKSNNNNNNNNNVSGSAGNASSSSASSTPSCPSSSSTPSSELKNVPATVAAAVAINPFTSDLIATDMVNQLRDLLPSTSTFLPHQTLNVPMVTVNNRNAFKTRTVKQPSHIAGRKTYTEDELQKALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYKMALERDSGSGAGGAVAIRDTSAGGDDPSNGQAAELLPLLAEEDDDEDRETTSVEDECTHRPATDGKDLHPTAHQQQPPPQHRGQQPRTPSSSFMTVEDLLRITAEQQQQAAVAMPNAETLRLFLQHYANNKLLQNRPEPHYRGRDGPVDGRSPSPPSTAAATRFPLPITADLWPAAAAAAAAAAALDPQHMGTYLTHLLSSSVTAASPTGGLASPHLQSHGSPPPPPPPPPPQQQHISAAHHQQELLKDFTVKDLMRKILDEEQQQQLQHLQQQYNNKLVDHRRWSSNGCSSSEPMDTGRSNDDDSNPSNVILRIPSYKPVPGSKGGDYESVACARDILSPGRANSARSDSSSPPSSSGGGIGGKHPVNLRDVIAKSITHRYQSDPPLPPPIPAVESFARAYHQYQQQHHHHQQQQQQQHHHHHLQQQQHGIPTSFGTGNSVIRNHNNNNLQQDDCRKRVPTPTNKSSSVITPSSAGAGFHTGGSSSSSSNSASAAAAAAAAAAAAAAGGKGTRPKRGKYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKNPPSSSSVSAAVVADHHSDRKKSSSDLSSSPSVVRPADKTTTTSSSSSSATPPAIKLPAHVQFPAQQQPPALQTPNGLKMFDAAGPVGPYQPSFPFWAPSPFHVPMEFQRNPVSFPPMSMMQRMQAESRLHHHQAAAVAAASIASLGKNAREVAENLYDGTDNGSFLDGIIRSSLETGLKSAATMAAVQAAAKNAMKGGGRGRDGSDGDDCSPKGSPQVTGTEDDGEDHLEDRATTPQSCQDSAGDSDDEKSRLESPDGQEHRRRQRQQRHEDSEHETVADRASTASPERATETENDDDDIADAVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00972960;
90% Identity
iTF_01328521; iTF_01305459; iTF_01304098;
80% Identity
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