Rmai005253.1
Basic Information
- Insect
- Rhopalosiphum maidis
- Gene Symbol
- Mblk-1
- Assembly
- GCA_003676215.3
- Location
- NC:33529360-33568174[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-17 5e-14 51.2 0.0 1 39 345 384 345 388 0.94 2 2 9.4e-19 1.4e-15 56.1 0.0 1 43 904 947 904 949 0.95
Sequence Information
- Coding Sequence
- ATGGGAAGAAGAAAATGGCACCAGTATCAAGACATTTTggcgaaaaattatttactggaAGAGGAATTGATGGATCGGAGAGAATGGGTTCCCGTCAAAACGTGTAATTCGTGTGATGTGAACACAGACCTGAGTATAGCGGATCACTCACCTGCAGAACTGGAGCCATCGTCTGAAACGGGAAGCTTGAGCGGCGGCAGTCGCAGCGCAGAGAGTCCGGAACCGGAACCGGGCAGGCGGTCGTCCTCCACACCGCCGACGGCGGCATCAGAGCCGTGTTGCGCCGATGACCGGTCGccgccaccaccgccgccactGCTGTCGCTGCCCAACCCCACAGCcgccgctgccgccgccgcaATGGCCGCGGTCGCGTCACTGAACAACTCGTCGTCATCATCGTCCACGACAACGATGACACCGGCTGGCGGGCTACCGTCGCCCAGCGCGTTGGAGGCCGCGGCCGCCGGCCTACCGAAATGGCTTTTGGCCGCCGCCACGCTGAGGCTGCAGGAGACGACGGCCGCTGCAGCGGCGGCAGCAGCCGCAGCCGCGGCCGCGACATCGGCGGCCACCGGATGCAAGTCGCCTCCCGCCCACCGTCACCatcaacagcagcagcagcaacagcaacagcaacagcaacagcaacaacaacaccAGTCGCTTGATCAACCGCTTGATCTCAGCGCTAagagcaacaacaacaacaacaacgtcAGCGGTTCGGGCGGCAACGCTTCGTCGTCATCCGCGTCGTCCACGCCGTCGTGCCCGAGCTCGTCGTCTACGCCGTCGTCCGAGCTGAAAAACGTGCCCGCCACCGTAGCGGCCGCCGTCGCCATCAACCCGTTCACGTCAGATCTCATCGCCACGGACATGGTGAACCAGCTGCGCGACCTGTTACCGAGCACGTCCACGTTCCTACCGCACCAAACGCTCAACGTGCCCATGGTGACCACCAACAACCGGAACGCGTTTAAGACGAGAACGGTGAAACAGCCAAGTCACATAGCCGGCCGGAAGACATACACGGAGGATGAGTTGCAAAAGGCGCTTCGGGACATCCAGAGCGGCAAGTTGGGCACGAGGCGGGCGGCCGTCATATATGGCATACCCAGGTCGACGTTGCGGAACAAGGTGTACAAGATGGCGCTGGAACGGGACAGCGGAAGCGTCGCCGGCGGTGCAGTGACCATTAGAGACGCGTCGGCCGGCGGGGACGACCCGTCCAACGGACAAGCGGCCGAGCTGTTGCCGTTGCTGGCTGAAGAAGACGACGACGAGGACAGGGAAACGACGTCCGTCGAAGACGAATGCACACACAGACCGGCGACGGACGGCAAGGACCTCCACCCCGCCGCACACCAACAACAACCGACGCCGCAGCACCGTGGCCAGCAGCCCAGGACGCCGTCGTCGTACATGACGGTCGAAGACTTGTTGCGGATCACGGCGGAACAACAGCAGCAGGCGGCCGTGGCCATGCCCAACGCCGAGACGCTCCGACTGTTCCTGCAACATTACGCCAACAACAAACTGCTGCAGAACAGACCGGAACCACATTACCGCGGGCGCGACGTACCGGTGGACGGTCGATCGCCATCACCACCGTCCACAGCCGCTGCCACCAGGTTTCCGCTGCCCATCACTGCGGACCTATGGCCGGCGGCTGCGGCGGCTGCAGCCGCGGCGGCGGCTTTAGATCCTCAACACATGGGAACGTATCTGACGCACTTGTTGTCCTCGTCGGTGACGGCCGCGTCGCCTACGGGCGGATTGGCCTCGCCGCACTTGCAATCGCATGGCAGCCCACCACCCCCACCGCCGCCACCACCCCCGCAGCAGCAACACATGTCAGCGGCTCACCACCAGCAAGAATTACTCAAAGATTTCACCGTCAAAGACTTGATGCGCAAGATACTGGACGAAGAACAACAGCAGCAGCTGCAGCACTTGCAGCAACAGTACAACAGCAAGCTGGTAGACCACAGACGGTGGTCGTCGAACGGTTGCAGTTCGTCTGAACCGATGGACACGGGTCGCAGCAACGACGACGACTCGAACCCGTCCAACGTCATCCTGAGAATACCATCGTACAAGCCAGTTCCCGGTAGCAAGGGTGGCGATTACGAGTCAGTGGCGTGTGCCCGGGACATCTTGTCTCCCGGGCGAGCCAACAGCGCACGGAGTGATTCGTCGTCGCCGCCGTCGTCTTCCGGTGGCGGTGTTGGTGGCAAACATCCGGTGAATTTGAGAGACGTGATCGCCAAGAGCATCACGCACAGATATCAATCCGATCCGCCGCTGCCACCGCCCATACCGGCCGTCGAGTCGTTCGCCCGGGCCTATCATCAGTACCAGCAACAACACCATCATCACCAccaacaacaacagcagcacCACCATCATctgcagcaacagcagcacGGAATACCCACTTCTTTCGGTACTGGCAACTCGGTCATCAGGAaccacaacaacaataatttgcAGCAGGACGACTGCCGTAAACGAGTGCCGACGCCCACCAACAAATCATCGTCGGTCATAACGCCTTCGTCCGCCGGCGCCGGGTTCCACACGGGCGGCTCttcatcgtcgtcgtccaaCTCGGCGTcggctgcggcggcggcggctgcgGCTGCGGCAGCGGCAGCGGCCGGTGGCAAGGGCACCAGGCCCAAGCGGGGTAAGTACAGAAACTACGACCGGGACAGCCTAGTGGAAGCTGTGCGAGCAGTGCAGCGTGGCGAAATGAGCGTGCACCGGGCCGGATCTTATTACGGAGTGCCGCACTCTACGCTCGAGTACAAGGTCAAGGAGAGACATCTGATGCGGCCCAGGAAACGGGAACCCAAGAACCCTCCGTCCTCGTCTTCAGTATCCGCGGCGGTTGCTGCCGACCACCATTCAGATCGAAAAAAGTCGTCGTCCGATCTGTCGTCATCGCCGTCGGTCGTCCGGCCGGCCGACAAGACCACTACCACCTCGTCGTCCTCGTCGTCTGCCACGCCGCCGGCCATAAAACTGCCCGCGCACGTCCAGTTCCCGGTGCAACAACAACCAACGTCGCTTCAGACGCCCAACGGGCTCAAGATGTTCGACGCCACAGGCCCAGTGGGCCCGTACCAGCCGTCGTTCCCGTTCTGGGCTCCGAGCCCGTTCCACGTGCCCATGGAGTTCCAGCGTAATCCGGTGACGTTCCCGCCGATGTCGATGATGCAGCGGATGCAGGCTGAGTCACGACTACACCACCACCAGGCCGCGGCCGTGGCTGCAGCGTCCATCGCCAGCTTGGGCAAAAACGCCCGCGAGGTAGCTGAAAACCTGTACGACGGAACGGACAACGGCAGCTTCCTGGACGGTATTATCAGGTCCAGTCTGGAGACGGGGCTCAAGTCGGCGGCTACCATGGCAGCTGTCCAAGCGGCTGCCAAGAACGCCATGAAGGGGGGTGGACGAGGTAGAGACGGCAGTGACGGCGACGACTGCAGTCCGAAAGGTTCGCCGCAAGTGACTGGTGCCGAAGATGACGGTGAAGACCATCAGGAGGACCGAGCAGCTACGCCACAGTCGTGCCAGGACTCGGCCGGGGACAGCGACGACGAGAAGTCACGGCTCGAGTCTCCAGACGGACAAGAACATGGCCGCCGTCAACGTCAACAGCGGCACGAAGATTCTGAACACGAAACAGTCGCCGACCGGGCGTCCACCGCTTCACCTGAACGCGCAACTGAAACCGaaaacgacgacgatgacATCGCCGACGCTGTCGTCTGA
- Protein Sequence
- MGRRKWHQYQDILAKNYLLEEELMDRREWVPVKTCNSCDVNTDLSIADHSPAELEPSSETGSLSGGSRSAESPEPEPGRRSSSTPPTAASEPCCADDRSPPPPPPLLSLPNPTAAAAAAAMAAVASLNNSSSSSSTTTMTPAGGLPSPSALEAAAAGLPKWLLAAATLRLQETTAAAAAAAAAAAAATSAATGCKSPPAHRHHQQQQQQQQQQQQQQQQHQSLDQPLDLSAKSNNNNNNVSGSGGNASSSSASSTPSCPSSSSTPSSELKNVPATVAAAVAINPFTSDLIATDMVNQLRDLLPSTSTFLPHQTLNVPMVTTNNRNAFKTRTVKQPSHIAGRKTYTEDELQKALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYKMALERDSGSVAGGAVTIRDASAGGDDPSNGQAAELLPLLAEEDDDEDRETTSVEDECTHRPATDGKDLHPAAHQQQPTPQHRGQQPRTPSSYMTVEDLLRITAEQQQQAAVAMPNAETLRLFLQHYANNKLLQNRPEPHYRGRDVPVDGRSPSPPSTAAATRFPLPITADLWPAAAAAAAAAAALDPQHMGTYLTHLLSSSVTAASPTGGLASPHLQSHGSPPPPPPPPPPQQQHMSAAHHQQELLKDFTVKDLMRKILDEEQQQQLQHLQQQYNSKLVDHRRWSSNGCSSSEPMDTGRSNDDDSNPSNVILRIPSYKPVPGSKGGDYESVACARDILSPGRANSARSDSSSPPSSSGGGVGGKHPVNLRDVIAKSITHRYQSDPPLPPPIPAVESFARAYHQYQQQHHHHHQQQQQHHHHLQQQQHGIPTSFGTGNSVIRNHNNNNLQQDDCRKRVPTPTNKSSSVITPSSAGAGFHTGGSSSSSSNSASAAAAAAAAAAAAAAGGKGTRPKRGKYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKNPPSSSSVSAAVAADHHSDRKKSSSDLSSSPSVVRPADKTTTTSSSSSSATPPAIKLPAHVQFPVQQQPTSLQTPNGLKMFDATGPVGPYQPSFPFWAPSPFHVPMEFQRNPVTFPPMSMMQRMQAESRLHHHQAAAVAAASIASLGKNAREVAENLYDGTDNGSFLDGIIRSSLETGLKSAATMAAVQAAAKNAMKGGGRGRDGSDGDDCSPKGSPQVTGAEDDGEDHQEDRAATPQSCQDSAGDSDDEKSRLESPDGQEHGRRQRQQRHEDSEHETVADRASTASPERATETENDDDDIADAVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00972960;
- 90% Identity
- iTF_01304773;
- 80% Identity
- -