Rpad001058.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- Mblk-1
- Assembly
- None
- Location
- scf7180000008239.657666:330357-369101[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.7e-17 1.2e-13 51.1 0.0 1 39 386 425 386 429 0.94 2 2 2.7e-18 3.2e-15 56.1 0.0 1 43 945 988 945 990 0.95
Sequence Information
- Coding Sequence
- ATGCAGTTGCAGCGCCGCACGGCCGTCGGATGCGGCCCGTGCCCGGCCGCGGCGCACGACCGTCAGGCGGTCAGGAAACACTTGCGCCGGTGGTCACACAACATGGTGCTCATCATCGGGTTGGAAAGGATCGCTGAAGAGTTAATGGGAAGAAGAAAATGGCACCAGTATCAAGACATTTTGGCGAAAAATTATTTACTGGAAGAGGAATTGATGGATCGGAGAGAATGGGTTCCCGTCAAAACGTGTAATTCGTGTGATGTGAACACAGACCTGAGTATAGCGGATCACTCACCTGCAGAACTGGAGCCATCGTCTGAAACGGGAAGCTTGAGCGGCGGCAGTCGCAGCGCAGAGAGTCCGGAACCGGAACCGGGCAGGCGGTCGTCCTCCACACCGCCGACGGCGGCATCAGAGCCGTGTTGCGCCGATGACCGGTCGCCGCCGCCACCGCCACTGCTGTCGCTGCCCAACCCCACGGCCGCCGCTGCCGCCGCCGCAATGGCCGCGGTCGCGTCACTGAACAACTCGTCGTCGTCATCGTCCACGACGACGATGACACCGGCTGGCGGGCCACCGTCGCCCAGCGCGCTGGAGGCCGCGGCCGCCGGCCTACCGAAATGGCTTTTGGCCGCCGCCACGCTCAGGCTGCAAGAGACGACGGCCGCCGCAGCGGCGGCAGCAGCCGCAGCCGCGGCCGCGACATCAGCGGCCACCGGATGCAAGTCGCCTCCCGCCCACCGTCACCATCAACAGCAGCAGCAGCAGCAGCAGCAGCAACACCAGTCGCTCGATCAACCGCTTGATCTCAGCGCCAAGAGCAACAACAGCAACAACAACGTCAGCGGTTCGGGCGGCAACGCTTCGTCGTCGTCCGCGTCGTCCACGCCGTCGTGCCCGAGCTCGTCGTCTACGCCGTCGTCCGAGCTGAAAAACGTGCCCGCCACCGTCGCGGCCGCCGTCGCCATCAACCCGTTCACGTCAGATCTCATCGCCACGGACATGGTGAACCAGCTGCGCGACCTGTTACCGAGCACGTCCACGTTCCTACCGCACCAAACGCTCAACGTGCCCATGGTGACCACCAACAACCGGAACGCGTTTAAGACGAGGACAGTGAAACAGCCAAGTCACATAGCCGGCCGGAAGACTTACACGGAGGATGAGTTGCAAAAGGCGCTTCGGGACATCCAGAGCGGCAAGTTGGGCACGAGGCGGGCGGCCGTCATATACGGCATACCCAGGTCGACGTTGCGGAACAAGGTGTACAAGATGGCGCTGGAACGGGACAGCGGAAGCGTCGCCGGCGGTGCAGTGACCATCAGAGACGCGTCGGCCGGCGGGGACGACCCGTCCAACGGACAAGCGGCCGAGCTGTTGCCGTTGCTGGCCGAAGAAGATGACGACGAGGACAGGGAAACGACGTCCGTCGAAGACGAATGCACACACAGACCGGCGGCGGACGGCAAGGACGTCCACCCCGCCGCACACCAACAACAACCACCGCCGCAGCACCGCGGCCAGCAGCCCAGGACGCCGTCGTCGTACATGACGGTCGAAGACTTGTTGCGGATCACGGCGGAACAACAGCAGCAGGCGGCCGTAGCCATGCCCAACGCCGAGACGCTCCGACTGTTCCTGCAACATTACGCCAACAACAAACTGCTGCAGAACAGACCGGAACCACATTACCGCGGGCGCGACGTACCGGTGGACGGCCGATCGCCATCGCCACCGCCCACAGCCGCTGCCACCAGGTTTCCGCTGCCCATCACTGCGGACTTATGGCCGGCGGCTGCAGCGGCTGCAGCGGCGGCGGCGGCCTTAGACCCTCAACACATGGGAACGTATCTGACGCACTTGTTGTCCTCGTCGGTGACGGCCGCGTCGCCTACGGGCGGATTGGCATCGCCGCACTTGCAATCGCATGGCAGCCCACCACCCCCACCACCACCGCCACCTCCGCAGAAGCAACACATGTCAGCGGCTCACCACCAGCAAGAATTACTCAAAGATTTCACCGTCAAAGACTTGATGCGCAAGATACTGGACGAAGAACAACAGCAGCAGCTGCAGCACTTGCAGCAACAGTACAACAGCAGACTGGTAGACCACAGACGGTGGTCGTCGAACGGTTGCAGTTCGTCTGAACCGATGGACACGGGTCGCAGCAACGACGACGACTCGAACCCGTCCAATGTCATCCTGAGAATACCATCGTACAAGCCAGTTCCCGGTAGTAAGGGTGGCGATTACGAGTCAGTGGCGTGTGCCAGGGACATCTTGTCTCCAGGGCGAGCCAACAGCGCCCGGAGTGATTCGTCGTCGCCGCCGTCGTCTTCCGGTGGCGGTGTTGGTGGCAAACATCCGGTAAATCTGAGAGACGTGATCGCCAAGAGCATCACGCACAGGTATCAGTCCGATCCGCCGCTCCCACCGCCCATACCAGCCGTCGAGTCGTTCGCCCGGGCCTATCATCAGTACCAGCAACAACACCATCATCACCACCAACAACAACAACAGCACCACCATCATCTGCAGCAACAGCAGCATGGCATACCCACTTCTTTCGGTACCGGAAACTCAGTCATCAGGAACCACAACAACAATAATTTGCAGCAGGAAGACTGCCGTAAACGAGTGCCGACGCCCACCAACAAATCATCGTCGGTCATAACGCCTTCGTCCGCCGGAGCCGGGTTCCACACAGGCGGCTCTTCATCGTCGTCGTCCAACTCGGCGTCAGCTGCGGCGGCGGCGGCTGCGGCTGCGGCAGCGGCAGCGGCCGGTGGCAAGGGCACCAGGCCCAAACGGGGTAAGTACAGAAACTACGACCGGGACAGTCTAGTGGAAGCTGTGCGAGCAGTGCAGCGTGGCGAAATGAGCGTGCACCGTGCTGGATCTTATTACGGAGTGCCGCACTCTACGCTCGAGTACAAGGTCAAGGAGAGACATCTGATGCGGCCCAGGAAACGGGAACCCAAGAACCCTCCGTCCTCGTCTTCAGTATCCGCGGCGGTTGCTGCCGACCACCATTCAGACCGAAAAAAGTCGACGTCCGATCTGTCGTCATCGCCGTCGGTCGTCCGGCCGGCCGACAAGACCACTACCACCTCGTCGTCCTCGTCGTCTGCCACGCCGCCGGCCATAAAACTGCCCGCGCACGTCCAGTTTCCGGTGCAACAACAACCACCGTCGCTTCAGACGCCCAATGGGCTCAAGATGTTCGACGCCGCAGGCCCGGTAGGCCCGTACCAGCCGTCGTTCCCGTTCTGGGCTCCGAGCCCGTTCCACGTGCCCATGGAGTTCCAGCGTAATCCGGTGACTTTCCCGCCGATGTCGATGATGCAACGGATGCAGGCCGAGTCACGACTACACCACCACCAGGCCGCGGCCGTGGCTGCCGCGTCCATCGCCAGCTTGGGCAAAAATGCCCGCGAGGTAGCTGAAAACCTGTACGACGGAACGGACAACGGCAGCTTCCTGGACGGTATTATCAGGTCCAGTCTGGAGACGGGGCTCAAGTCGGCGGCTACTATGGCAGCTGTCCAAGCGGCTGCCAAGAACGCCATGAAGGGAGGCGGACGAGGTAGAGATGGCAGTGACGGCGACGACTGCAGTCCGAAAGGTTCGCCGCAAGTGACTGGGGCCGAAGATGACGGTGAAGACCATCAGGAGGACCGAGCAGCTACGCCACAGTCGTGCCAGGACTCTGTCGGGGACAGCGACGACGAGAAGTCACGACTCGAGTCTCCGGACGGACAGGAACATCGCCGCCGTCAACGTCAACAGCGGCACGAAGATTCCGAACACGAAACAGTCGCCGACCGGGCGTCCACCGCTTCACCCGAACGCGCAACCGAAACGGAAAACGACGATGATGACATCGCCGACGCTGTCGTCTGA
- Protein Sequence
- MQLQRRTAVGCGPCPAAAHDRQAVRKHLRRWSHNMVLIIGLERIAEELMGRRKWHQYQDILAKNYLLEEELMDRREWVPVKTCNSCDVNTDLSIADHSPAELEPSSETGSLSGGSRSAESPEPEPGRRSSSTPPTAASEPCCADDRSPPPPPLLSLPNPTAAAAAAAMAAVASLNNSSSSSSTTTMTPAGGPPSPSALEAAAAGLPKWLLAAATLRLQETTAAAAAAAAAAAAATSAATGCKSPPAHRHHQQQQQQQQQQHQSLDQPLDLSAKSNNSNNNVSGSGGNASSSSASSTPSCPSSSSTPSSELKNVPATVAAAVAINPFTSDLIATDMVNQLRDLLPSTSTFLPHQTLNVPMVTTNNRNAFKTRTVKQPSHIAGRKTYTEDELQKALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYKMALERDSGSVAGGAVTIRDASAGGDDPSNGQAAELLPLLAEEDDDEDRETTSVEDECTHRPAADGKDVHPAAHQQQPPPQHRGQQPRTPSSYMTVEDLLRITAEQQQQAAVAMPNAETLRLFLQHYANNKLLQNRPEPHYRGRDVPVDGRSPSPPPTAAATRFPLPITADLWPAAAAAAAAAAALDPQHMGTYLTHLLSSSVTAASPTGGLASPHLQSHGSPPPPPPPPPPQKQHMSAAHHQQELLKDFTVKDLMRKILDEEQQQQLQHLQQQYNSRLVDHRRWSSNGCSSSEPMDTGRSNDDDSNPSNVILRIPSYKPVPGSKGGDYESVACARDILSPGRANSARSDSSSPPSSSGGGVGGKHPVNLRDVIAKSITHRYQSDPPLPPPIPAVESFARAYHQYQQQHHHHHQQQQQHHHHLQQQQHGIPTSFGTGNSVIRNHNNNNLQQEDCRKRVPTPTNKSSSVITPSSAGAGFHTGGSSSSSSNSASAAAAAAAAAAAAAAGGKGTRPKRGKYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKNPPSSSSVSAAVAADHHSDRKKSTSDLSSSPSVVRPADKTTTTSSSSSSATPPAIKLPAHVQFPVQQQPPSLQTPNGLKMFDAAGPVGPYQPSFPFWAPSPFHVPMEFQRNPVTFPPMSMMQRMQAESRLHHHQAAAVAAASIASLGKNAREVAENLYDGTDNGSFLDGIIRSSLETGLKSAATMAAVQAAAKNAMKGGGRGRDGSDGDDCSPKGSPQVTGAEDDGEDHQEDRAATPQSCQDSVGDSDDEKSRLESPDGQEHRRRQRQQRHEDSEHETVADRASTASPERATETENDDDDIADAVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00972960;
- 90% Identity
- iTF_01304773;
- 80% Identity
- -