Rnym012133.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- retn
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000014.1:2775750-2817382[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-26 3.5e-23 82.3 0.0 2 89 57 142 56 142 0.96 2 2 2.6 5e+03 -1.6 0.3 61 86 225 248 203 249 0.53
Sequence Information
- Coding Sequence
- ATGACGTGCTGTACGGGAACAGCGACGGCGGTGCAGTCGGTTCCGCGTAAAGTCGTAAAAACGGGAAATGAAAAGTGCTCAGTGTGCAatgctgttgctgctgctgctgcaggTACACGCAGTAGAAAGAGCTGGAAATCGtTATACTCGGCGGGCAGCGAATCCGACAGACGGACCTTTCTAGACTCGCTGTTCAGTTTTATGCAAGAACAAGgaACTCCAATTAGTCGTTTACCCATCATGGCCAAACGCGTGTTGGATCTGTACACCCTGTACAAGTTGGTTGTCCAGAGAGGGGGTATCGTTGCGGTCATCACCAAGAAATTGTGGCAAGAGATCATCCGAGGCCTGGGACTACCTCCTTCTATAACGAGTGCCGCGTTCACATTACGCACACAAtacgttaaatatttgtatgcgTACGAGTCACGAATGAACCAGTTCAGTACGTTGGACGAGCTGAATATGGCGATAGCGGGTAACCGGCGCGAAGGTCGGCGGAACAAGTCGCTCATGTACTCGGACATGCCGCCTCCACCGCCCGGTCACCTACACCATCACCACCATAGTCATCACCAGCAAGTGCACGGCGGCCACCCACACTCGATGATGGGCGGAGGCGCTCCATCGCAGGCGTCGCcgcagcaacagcagcaacagcaacagcagcagcagcagcagcatcagcaacagcaacagccgCCTTCGTCTCATCACCATCACCACTACGCCAACGTGCTGGCCGCTGAAGATCGGTTCCGTCATCTCGCCGCCGCCATCATCGACAATCACCATCACGCGGCCGCCGCTGCAGCTGCCGCCGCGGCCGGCGTCAATGTCGACCACCCCAGGCTGCGGATGCAATCGTGCAGTCCGCCGCAACATCAGCAACAATTGCAATTGCAATCGGAATGCAAGACGTCCGCAGTCGCGTTGCACCAGACACCTCGGTCACCGGCCGCCGCCGGACTGCCACCACCGCCACCAATGCCACCGTCGTCGCTGTTCAATGGCCACCAGCCGCCGTCGTTCCAACATCTCCATCAACAGCAGCAACAACAAAATCAGTCCAACGCCACCCAGTCCAACAACGAGCAGACCAACAAACAGAGAGaACTACTCAGCATGCTCATGTGGATGGACATTGTCAGAGCGAATCAAACTGCAATGCCGAGACTACCCATTTCAAGTTTGCCATCCAGTCCGTCGGCTGCtgcagcggcggcggcggccgcGTACACGGCGGCCGCGGCGCTGAACCTCACACCCGCGGCGTACAACAAGGGACAGCAGATGGCCGCCGTGGTCGTCGTGCCGGAACAGAGCGAAGCGCTGAACTTGGGCAAAAAGAGGACGTcgaacaacaacaacagcgaGGACGAGGACGCGGACGAGTACGGCGGCAGGCGCGGATCCGTGTCGTCCGCGGCGAAGCGCATCAAGACGGAACGGTCTTCGCCGCCGGTCAGCGGTTGTTCCAGCGACGACGAAAAGGCTGCGGCCAAGGCGACGAGCAACGGTAGCCCGTCGCCGCCGCAACCGTCGGCCGCCGCCGACGACGCCGCGTACCGATCGGACACGAGGCGCGGTTCGTCGCCGATCGACGAGGACGTGGTCGAGATGGACATCAACACGTCGCCTTCGGCTGGTCCGTCTGGTAACAACGGATTGGCGATTTCCGTGACGCGTAGAACGAAAAACGGCGTGTACATGGGTCAACTCACCAAGAACAACGCATTGATCAACGGAGGATTGAACAACAACGCAAATCCGTTCGTTTTGCATCTAAACGGAGATCTATACACTGGACAGTTGCAGTTGCAACAGCAGCAGATGGCCAACAACTGA
- Protein Sequence
- MTCCTGTATAVQSVPRKVVKTGNEKCSVCNAVAAAAAGTRSRKSWKSLYSAGSESDRRTFLDSLFSFMQEQGTPISRLPIMAKRVLDLYTLYKLVVQRGGIVAVITKKLWQEIIRGLGLPPSITSAAFTLRTQYVKYLYAYESRMNQFSTLDELNMAIAGNRREGRRNKSLMYSDMPPPPPGHLHHHHHSHHQQVHGGHPHSMMGGGAPSQASPQQQQQQQQQQQQQHQQQQQPPSSHHHHHYANVLAAEDRFRHLAAAIIDNHHHAAAAAAAAAAGVNVDHPRLRMQSCSPPQHQQQLQLQSECKTSAVALHQTPRSPAAAGLPPPPPMPPSSLFNGHQPPSFQHLHQQQQQQNQSNATQSNNEQTNKQRELLSMLMWMDIVRANQTAMPRLPISSLPSSPSAAAAAAAAAYTAAAALNLTPAAYNKGQQMAAVVVVPEQSEALNLGKKRTSNNNNSEDEDADEYGGRRGSVSSAAKRIKTERSSPPVSGCSSDDEKAAAKATSNGSPSPPQPSAAADDAAYRSDTRRGSSPIDEDVVEMDINTSPSAGPSGNNGLAISVTRRTKNGVYMGQLTKNNALINGGLNNNANPFVLHLNGDLYTGQLQLQQQQMANN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00134027; iTF_00018800; iTF_01031740;
- 90% Identity
- iTF_00134027;
- 80% Identity
- -