Mcer002792.1
Basic Information
- Insect
- Myzus cerasi
- Gene Symbol
- retn
- Assembly
- None
- Location
- Mc1062:93781-114094[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-20 1.1e-16 61.6 0.0 17 89 44 114 33 114 0.94 2 2 1.9 6.6e+03 -1.8 0.2 69 86 199 217 178 218 0.61
Sequence Information
- Coding Sequence
- ATGGGCATACGATTTTACACGGGACATTTTTCCCCTCCCGCCCGCCCACCGCCGTACGCGGACCTCACCTCGCTGTACAAAGGCGCCGCGCACGAGATCAATCACGCCACACACGCGGCGATATTTACACGAACTCCAATTAGTCGTCTACCCATCATGGCCAAACGTGTGTTGGATTTGTACACGCTGTATAAATTGGTCGTGCAGAGAGGAGGCATCGTTGCGGTCATCACCAAGAAGTTGTGGCAAGAGATCATCCGAGGCCTGGGACTACCTCCTTCAATAACGAGTGCCGCGTTCACATTACGCACACAATACGTCAAATACTTGTACGCGTACGAGTCGCGGATGAACCAGTTCAGTACGTTGGACGAGCTGAATATGGCGATAGCGGGCAACCGGCGCGAGGGCCGTCGGAACAAGTCGCTCATGTATTCGGACATGCCACCGCCACCACACGGCCACCCGCACCACCATCACCACAGCCATCACCAACAAGTTCACGGTGGCCACCCGCATTCAATGATGGGCGGGAGTGCCCCGCCGCAGCCGTCGTCGCAACAACAGCAACAACAGCAACAACAACAGCATCAGCAACAGCAACAGCCGCCGTCGTCCCATCACCATCAACACTACGCCAACGTGCTGGCCGCCGAGGATCGGTTTCGGCACCTGGCCGCAGCCATCATCGACAACCACCATCACGCGGCCGCCGCTGCAGCCGCCGCCGCGGCCGGTGTAGGTGTCGACCACCCCAGGCTGCGGATGCAATCGTGCAGTCCACCGCAGCATCAGCAACAACAATTGCAATTGCAACCGGAATGCAAGACGTCCGCGGTCGCCTTGCACCAGACGCCCCGATCACCAGCCGCCGCTGGACTTCCACCACCGCCGCCCATGCCACCGTCGTCACTGTTCAATGGCCACCAGCCACCGTCGTACCAACACCTCCATCAACAGCAGCAACAGCAACATCAGTCCAACGCTGTCCAGTCCACCAACGAGCAGACAAACAAACAAAGAGAGCTCCTCAGCATGCTAATGTGGATGGACATTGTCAGGGCGAATCAAACCGCAATGCCCAGATTACCCATTTCGAGTTTGCCGTCCAGTCCGTCAGCTGCTGCAGCGGCGGCGGCGGCTGCTTATACGGCGGCGGCGCTTAACCTTACGCCCGCGTACAAGGGACAGCCGATGCCGGTGGTCGTCGTGCCAGAACAGAGCGAAGCTTTGAACTTGGGCAAAAAGAGGACATCGAACAACAACAACAGCGAGGACGAGGACGTAGACGGTGACGGTCCGGACGAGTTCATTGGCAGACGCGAGTCCATGTCATCGGCGGCGAAGCGCATCAAAACGGAACGGTCTTCGCCGCCCGTCAGTGGCTGTTCCAGCGATGAGGAAAAGGCCGCTGCAAAGGTGACGACCAACGGAAGTCCGTCGCCAAAACAACCTTCGGCCGCCGACGATGCCGAACATCAATCCGACATGAGGCGTAGCTCGTCACCGATCTACGAGGACGTGACCGAGGTGGAGATCAACACGTTGCCTTCGGCTGGTCCGTCCAGTAACAATGGTTTTGCGATTTCCGTGACGCGCAGAACAAAAAACGGCGTGTACATGGGCAAACTCACCAAAAACCACGCATTGGTCAATGGAGGCAAGTATTATATTATCTTAGCAATAATAATATGA
- Protein Sequence
- MGIRFYTGHFSPPARPPPYADLTSLYKGAAHEINHATHAAIFTRTPISRLPIMAKRVLDLYTLYKLVVQRGGIVAVITKKLWQEIIRGLGLPPSITSAAFTLRTQYVKYLYAYESRMNQFSTLDELNMAIAGNRREGRRNKSLMYSDMPPPPHGHPHHHHHSHHQQVHGGHPHSMMGGSAPPQPSSQQQQQQQQQQHQQQQQPPSSHHHQHYANVLAAEDRFRHLAAAIIDNHHHAAAAAAAAAAGVGVDHPRLRMQSCSPPQHQQQQLQLQPECKTSAVALHQTPRSPAAAGLPPPPPMPPSSLFNGHQPPSYQHLHQQQQQQHQSNAVQSTNEQTNKQRELLSMLMWMDIVRANQTAMPRLPISSLPSSPSAAAAAAAAAYTAAALNLTPAYKGQPMPVVVVPEQSEALNLGKKRTSNNNNSEDEDVDGDGPDEFIGRRESMSSAAKRIKTERSSPPVSGCSSDEEKAAAKVTTNGSPSPKQPSAADDAEHQSDMRRSSSPIYEDVTEVEINTLPSAGPSSNNGFAISVTRRTKNGVYMGKLTKNHALVNGGKYYIILAIII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01304636;
- 90% Identity
- iTF_00018800;
- 80% Identity
- -