Apis012507.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- retn
- Assembly
- GCA_005508785.1
- Location
- NC:8961334-8981101[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-17 2.2e-14 53.5 0.0 27 89 2 62 1 62 0.94 2 2 3.6 6e+03 -2.4 0.5 67 86 148 166 131 167 0.53
Sequence Information
- Coding Sequence
- ATGGCCAAACGCGTGTTGGATTTGTACACACTGTATAAGTTAGTCGTCCAGAGGGGTGGCATTGTCGCGGTCATCACCAAGAAGTTGTGGCAAGAGATCATCCGAGGCCTGGGCCTACCTCCTTCTATAACGAGTGCCGCATTCACATTACGCACACAataCGTCAAATACTTGTACGCCTACGAGTCGCGGATGAACCAGTTCAGTACGTTGGACGAACTGAACATGGCGATAGCGGGCAACCGGCGCGAGGGCCGGCGAAACAAGTCGCTCATGTATTCGGACATGCCACCGCCACCACCCGGACACCCACACCACAATCATCACAGCCATCACCAACAAGTGCACGGTGGCCACCCGCACTCTATGATGGGCGGTGGCGCCCCGCCGCAGCCGTCGtcacaacaacaacagcaacagcaacagcagcagcagcatcagcaacagcaacagccgCCGTCGTCCCATCACCATCACCATTACGCCAACGTGCTGGCCGCCGAAGATCGGTTTCGTCACCTTGCCGCCGCCATCATCGACAACCACCATCACGCGGCCGCCGctgcagccgccgccgccgcggccGGCGTTGGTGTCGACCACCCCAGGCTACGGATGCAATCGTGCAGTCCACCGCAGCATCAGCAACAACAATTGCAACTGCAACCGGAATGCAAGACGTCCGCGGTCGCGTTGCACCAGACGCCCCGATCGCCGGCCACCATCGGACTTCCACCGCCGCCACCCATGCCACCGTCGTCGCTGTTCAACGGCCACCAGCCGTCGTCGTACCAACAACTCCATCAACAGCAACATCAGTCCAACACCGTCCAGTCCACCAACGAGCAGACAAACAAACAGAGAGAGCTCCTCAGCATGCTAATGTGGATGGATATTGTCAGAGCGAATCAAACCGCAATGCCGAGACTACCTATTTCGAGCCTGCCGTCCAGTCCATCGGCCgctgcagcggcggcggcggctgcttATACGGCGGCGGCTGCGCTTAACCTTACGCCCACGTACAAGGGACAGCCGATGTCGGTGGTCGTTGTGCCAGAGCAGAGCGAAGCGTTGAACTTGGGCAAAAAGAGGACAtcgaacaacaacaacagcgaGGACGAGGACGCAGACGGTGACGGTCCCGACGAGTATGATGGCGGACGCGAGTCCATGTCATCCGCGGCGAAGCGCATCAAAACGGAACGGTCTTCGCCGCCCGTCAGTGGCTGTTCCAGCGATGACGAAAAGGCCGTGGCAAAGGCCACGAGCAACGGCAGTCCGTCGCCGCCCCAACCGTCGGCCGCCGACGACGCCGCGTACAGGTCCGACGTGAGGCGTAGCTCGTCGCCGATAGACGAGGACGTGGTCGAGATGGACATAAACACGTCGGCTACGGCTGGTCCGTCCAGTAACAATAATGGCTTGGCGATTTCCGTGACGCGCAGAACGAAAAACGGAGTGTACATTGGCCAACTCACCAAAAACAACGCATTGGTCAACGGAGGATTGAACAATAACGTGAATCCATTCGTTTTGCACCTGAACGGCGATCTATACACCGGTCAATTGAAGTTGCAACAGCAGCAGGTGGCCAATAACTGA
- Protein Sequence
- MAKRVLDLYTLYKLVVQRGGIVAVITKKLWQEIIRGLGLPPSITSAAFTLRTQYVKYLYAYESRMNQFSTLDELNMAIAGNRREGRRNKSLMYSDMPPPPPGHPHHNHHSHHQQVHGGHPHSMMGGGAPPQPSSQQQQQQQQQQQHQQQQQPPSSHHHHHYANVLAAEDRFRHLAAAIIDNHHHAAAAAAAAAAAGVGVDHPRLRMQSCSPPQHQQQQLQLQPECKTSAVALHQTPRSPATIGLPPPPPMPPSSLFNGHQPSSYQQLHQQQHQSNTVQSTNEQTNKQRELLSMLMWMDIVRANQTAMPRLPISSLPSSPSAAAAAAAAAYTAAAALNLTPTYKGQPMSVVVVPEQSEALNLGKKRTSNNNNSEDEDADGDGPDEYDGGRESMSSAAKRIKTERSSPPVSGCSSDDEKAVAKATSNGSPSPPQPSAADDAAYRSDVRRSSSPIDEDVVEMDINTSATAGPSSNNNGLAISVTRRTKNGVYIGQLTKNNALVNGGLNNNVNPFVLHLNGDLYTGQLKLQQQQVANN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01304636;
- 90% Identity
- iTF_01031740;
- 80% Identity
- -