Acrc015609.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- retn_1
- Assembly
- GCA_009835225.1
- Location
- VUJU01003401.1:3590-24063[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-20 1.9e-16 60.9 0.0 18 89 4 73 2 73 0.95 2 2 1 3.9e+03 -1.0 0.1 63 86 156 177 123 178 0.64
Sequence Information
- Coding Sequence
- atgcctcgaACTCCAATTAGCCGTCTACCCATCATGGCCAAACGCGTGTTAGATCTGTACACTCTGTACAAATTGGTTGTCCAGAGAGGTGGTATCGTTGCGGTCATCACCAAAAAATTGTGGCAAGAGATCATCCGAGGCCTGGGACTACCCCCTTCTATAACGAGTGCCGCGTTCACATTACGCACAcaatacgttaaatatttgtacgcGTACGAATCACGAATGAACCAGTTCAGTACGTTGGACGAGCTGAACATGGCTATAGCGGGCAATCGGCGCGAGGGCCGGCGAAACAAGTCGCTCATGTACTCGGAcatgccgccgccgccgcccggCCACCCGCACCACCATCACCACGGTCATCACCAGCAAGTGCACCAAGGCGGTCACCAGCACCCGATGATGGGCGGCGGCGCTCCGCCGCAGTCGTCTCCgcaacaacaacagcaacagcaacagcaccagcaccagcaacagcaacagacGCCTTCGTCCCATCACCATCACCACTACGCCAACGTGCTGGCCGCCGAGGATCGGTTCCGGCACCTGGCCGCCGCCATCATCGACAATCACCATCACGCGGCGGCCGCCGCAGCTGCAGCCGCCGCGGCCGGCGTCGGCGTCGACCACCCCAGGCTGCGGATGCAATCGTGCAGTCCGCCGCAGCACCAGCAACAATTGCAACTGCAACCGGAATGCAAGACGCAGTCCGCTGTCGCGTTGCACCAGACACCCCGATCGCCGGCCGCCGGACTTCCGCCACCGCCACCCATGCCGCCGTCGTCGCTGTTCAACGGCCACCAGCCGCCGTCGTTCCAACACCTCCATCAacagcagcaacaacaacatCAGTCCAACGCCGTCCAGACAAACAACGAGCAGACAAACAAACAGAGAGAACTCCTTAGCATGCTCATGTGGATGGACATTGTCAGAGCGAACCAAACTGCAATGCCGAGACTACCCATTTcaaGTCTGCCATCCAGTCCGTCGGCTGCtgctgcggcggcggcggccgcTTATTCGGCGGCCGCGGCGCTGAACCTCACTCCCGCGTACAAAGGTCAGCAGCAGATGTCAGCCGCGGTCGTCGTGCCGGAACAGAGCGAAGCGTTGAACTTGGGCAAAAAGAGGACGTcgaacaacaacaacagcgaGGACGAGGACGGCGGCGACCGTCCGGACGACGAGTACGACCGCGGCCGACGCGAATCGGTGTCGTCAGCGGCGAAACGCATCAAAATGGAACGGTCTTCGCCGCCGGTCAGCGGTTTTTCCAGCGACGACGAAAAGGCCGCGGCCAAGGCGACGAGCAACGGTAGCCCGTCGCCGCCGCAACCGTCGGCCGCCGCCTCCGACGACGTCGCGTACCGATCGGACACGTCGCGCGACTCGTCACCGATCGACGAGGACGTGGTCGAGATGGACATCAACACGTCGCCTTTAGCCGgttCGTCCGGCAACAGTGGCTTGGCGATTTCCGTAACGCGCAGAACGAAAAATGGCGTGTACATGGGTCAACTCACCAAGAACAACGCATTGATCAACGGAGGATTGAACAACAACGCAAATCCGTTCGTCTTGCACTTGAACGGAGATCTTTACACCGGACAGTTACAATTGCAACAGCAGCAGATGGCCAACAACTGA
- Protein Sequence
- MPRTPISRLPIMAKRVLDLYTLYKLVVQRGGIVAVITKKLWQEIIRGLGLPPSITSAAFTLRTQYVKYLYAYESRMNQFSTLDELNMAIAGNRREGRRNKSLMYSDMPPPPPGHPHHHHHGHHQQVHQGGHQHPMMGGGAPPQSSPQQQQQQQQHQHQQQQQTPSSHHHHHYANVLAAEDRFRHLAAAIIDNHHHAAAAAAAAAAAGVGVDHPRLRMQSCSPPQHQQQLQLQPECKTQSAVALHQTPRSPAAGLPPPPPMPPSSLFNGHQPPSFQHLHQQQQQQHQSNAVQTNNEQTNKQRELLSMLMWMDIVRANQTAMPRLPISSLPSSPSAAAAAAAAAYSAAAALNLTPAYKGQQQMSAAVVVPEQSEALNLGKKRTSNNNNSEDEDGGDRPDDEYDRGRRESVSSAAKRIKMERSSPPVSGFSSDDEKAAAKATSNGSPSPPQPSAAASDDVAYRSDTSRDSSPIDEDVVEMDINTSPLAGSSGNSGLAISVTRRTKNGVYMGQLTKNNALINGGLNNNANPFVLHLNGDLYTGQLQLQQQQMANN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01304636;
- 90% Identity
- iTF_01304636;
- 80% Identity
- -