Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294038.1:64305047-64306639[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 4.4 7.5e+03 -1.9 0.1 20 47 57 84 55 89 0.81

2 13 3.7 6.3e+03 -1.6 0.0 27 45 92 110 90 114 0.81

3 13 0.0022 3.9 8.7 0.1 21 45 114 138 106 142 0.91

4 13 0.00035 0.6 11.3 0.0 21 50 142 170 138 174 0.88

5 13 1.1 2e+03 -0.0 0.0 22 49 171 198 169 202 0.82

6 13 0.59 1e+03 0.9 0.0 21 44 198 221 190 225 0.74

7 13 0.11 2e+02 3.2 0.1 21 44 226 249 222 256 0.90

8 13 0.15 2.7e+02 2.8 0.0 21 44 282 305 279 313 0.83

9 13 0.012 20 6.4 0.0 21 47 310 336 307 342 0.85

10 13 2.1 3.7e+03 -0.9 0.0 21 31 338 348 334 363 0.78

11 13 0.029 51 5.1 0.0 21 48 366 392 355 398 0.84

12 13 0.11 1.9e+02 3.2 0.0 25 46 427 448 411 455 0.82

13 13 0.77 1.3e+03 0.5 0.0 20 44 495 519 488 524 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	4.4	7.5e+03	-1.9	0.1	20	47	57	84	55	89	0.81
2	13	3.7	6.3e+03	-1.6	0.0	27	45	92	110	90	114	0.81
3	13	0.0022	3.9	8.7	0.1	21	45	114	138	106	142	0.91
4	13	0.00035	0.6	11.3	0.0	21	50	142	170	138	174	0.88
5	13	1.1	2e+03	-0.0	0.0	22	49	171	198	169	202	0.82
6	13	0.59	1e+03	0.9	0.0	21	44	198	221	190	225	0.74
7	13	0.11	2e+02	3.2	0.1	21	44	226	249	222	256	0.90
8	13	0.15	2.7e+02	2.8	0.0	21	44	282	305	279	313	0.83
9	13	0.012	20	6.4	0.0	21	47	310	336	307	342	0.85
10	13	2.1	3.7e+03	-0.9	0.0	21	31	338	348	334	363	0.78
11	13	0.029	51	5.1	0.0	21	48	366	392	355	398	0.84
12	13	0.11	1.9e+02	3.2	0.0	25	46	427	448	411	455	0.82
13	13	0.77	1.3e+03	0.5	0.0	20	44	495	519	488	524	0.85

Sequence Information

Coding Sequence: ATGAATCCTGTGGAATATTGTGAAAAAATCGAAAATGGCGTTAAAGATATTAAAACAGAAGATATGGAAATGGTGGAAATCAAACTGGAGGACTTGCATCACTCAATAGAAATTAAGGAAGAGACTTTTATCGACGAATCTCCTTTCGATGAGGATTACGAGATTACACAAAGttgtaaacaatttaaatgCAGGGTATGTGATCTAATATTTACCGATAAACTTCAACTGAAAGAACACACAAAATTGCATTCCGTCGGGAAGCGATTTTTGTGTACAATTTGTGGTCGCACATTTTCGGTTAAAACATCCCTTAGGAACCATTTAAGGGTACATACTGGTGAGAAGCCGTTTTCTTGTGAGTTATGTGAATACAAAACTCGACAGAAGGGAAATCTCAAGCATCATTTAcgaactcatactggtgagaagcCATTTTCCTGCGATGTTTGCGACTTCAAAAGTgcccaaaaacgaaatttgaaatCTCACTTATTGAATCATTTTGGTGAGAAGCCGTTCAGTTGTGAGCTTTGCgattttaaatgtttacaattaataacttTGAAAGACCATTTGCGaattcatacaggcgaaaaaccatttgggTGTGATATTTGCGATTTTAGGAGTTCTCGGAAAGGAAATTTGAAAATCCATATTCTAACTCATACAGGGGAAAAACCTTTGCAGTGTGAAATATGCGACTTTAAATGTTTACATTCCACAACTTTAAGGAACCACATGGTAACTCATACCGGGGAAAAACGTTTTGCCTGtgaattttgcaactttaaatcggTACATAAAGCAAGTCTGAAATATCACATGGTAACTCATACTGGGGAGAAACCGCTTtcgtgtgaaatttgcgactttAAGTGTATCCAAATGGGAAGCTTGAAAAACCATCTACTGACCCATACGGGCGAAAAACCGTTCGCATGCACGATTTGCAACTACAAAAGTTCgcaaaaaggaaatttaaaaattcatcttGTAACTCACAGTACCGAGAAAccgttcaaatgtgaaatttgcgactttAAATGTTCCCATTTAACAACCTTAAAAAACCACATTGTAACACATTCCGGAGAAAAACCGTACGCCTGTGAATTTTGCGACTACAGGAGCTTTCAAAAGGGAAATTTAAGAACTCACTTACTCACCCATTCGGGCAAAAAACCGTTCAAGTGCAAAGTTTGTAACTTTAGTTGTTCCCACGTAACAACTTTGAAAAACCACATGGTAAGTCATACAGGTGAGAAATTCGCCTACACCTGCGGAGTTTGCGACTTTAAAAGTGCTCAAAAGCGGACCTTAAAAGCTCATTTATTAACCCATACTTCGGAAAAACCGTGTGACATGTCCATCGTGAAATCATCGATGACTCATATAGAcgataaaatatttgtttgcaAAATATGCGACTTTAAAACTTCCCAAAAGGATCTTCTAAAGTCTCACTTAAGTACCCATACTGCCGAGAAGTCTTTCGTTTGTGATATTTGTGGATTTAAATGCTATCAAAAGGGATATTTGAGGGTGCATTTACTAACGCACAGTGGCGAAAAATCTCCCAAAAGTTAA
Protein Sequence: MNPVEYCEKIENGVKDIKTEDMEMVEIKLEDLHHSIEIKEETFIDESPFDEDYEITQSCKQFKCRVCDLIFTDKLQLKEHTKLHSVGKRFLCTICGRTFSVKTSLRNHLRVHTGEKPFSCELCEYKTRQKGNLKHHLRTHTGEKPFSCDVCDFKSAQKRNLKSHLLNHFGEKPFSCELCDFKCLQLITLKDHLRIHTGEKPFGCDICDFRSSRKGNLKIHILTHTGEKPLQCEICDFKCLHSTTLRNHMVTHTGEKRFACEFCNFKSVHKASLKYHMVTHTGEKPLSCEICDFKCIQMGSLKNHLLTHTGEKPFACTICNYKSSQKGNLKIHLVTHSTEKPFKCEICDFKCSHLTTLKNHIVTHSGEKPYACEFCDYRSFQKGNLRTHLLTHSGKKPFKCKVCNFSCSHVTTLKNHMVSHTGEKFAYTCGVCDFKSAQKRTLKAHLLTHTSEKPCDMSIVKSSMTHIDDKIFVCKICDFKTSQKDLLKSHLSTHTAEKSFVCDICGFKCYQKGYLRVHLLTHSGEKSPKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292195;
90% Identity: iTF_01294111;
80% Identity: iTF_01294111;