Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294038.1:64305047-64306639[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00021 0.014 16.8 1.1 1 23 62 84 62 84 0.98

2 16 9.4e-07 6.2e-05 24.2 0.9 1 23 90 112 90 112 0.96

3 16 6.1e-05 0.0041 18.5 3.9 1 23 118 140 118 140 0.98

4 16 0.0007 0.046 15.1 1.1 1 23 146 168 146 168 0.97

5 16 0.25 17 7.1 1.8 1 23 174 196 174 196 0.96

6 16 8e-05 0.0053 18.1 0.4 3 23 204 224 202 224 0.98

7 16 0.094 6.3 8.4 4.2 2 23 231 252 230 252 0.96

8 16 0.013 0.85 11.2 2.5 1 23 258 280 258 280 0.97

9 16 0.0021 0.14 13.6 1.2 2 23 287 308 286 308 0.97

10 16 7.6e-05 0.0051 18.2 0.5 1 23 314 336 314 336 0.97

11 16 0.0012 0.077 14.5 5.0 1 23 342 364 342 364 0.98

12 16 0.00041 0.028 15.9 1.2 1 23 370 392 370 392 0.97

13 16 0.0049 0.32 12.5 6.1 1 23 398 420 398 420 0.98

14 16 0.00033 0.022 16.2 0.6 1 23 427 449 427 449 0.99

15 16 4.5e-05 0.003 18.9 1.4 1 23 472 494 472 494 0.98

16 16 9.1e-05 0.006 17.9 1.8 1 23 500 522 500 522 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00021	0.014	16.8	1.1	1	23	62	84	62	84	0.98
2	16	9.4e-07	6.2e-05	24.2	0.9	1	23	90	112	90	112	0.96
3	16	6.1e-05	0.0041	18.5	3.9	1	23	118	140	118	140	0.98
4	16	0.0007	0.046	15.1	1.1	1	23	146	168	146	168	0.97
5	16	0.25	17	7.1	1.8	1	23	174	196	174	196	0.96
6	16	8e-05	0.0053	18.1	0.4	3	23	204	224	202	224	0.98
7	16	0.094	6.3	8.4	4.2	2	23	231	252	230	252	0.96
8	16	0.013	0.85	11.2	2.5	1	23	258	280	258	280	0.97
9	16	0.0021	0.14	13.6	1.2	2	23	287	308	286	308	0.97
10	16	7.6e-05	0.0051	18.2	0.5	1	23	314	336	314	336	0.97
11	16	0.0012	0.077	14.5	5.0	1	23	342	364	342	364	0.98
12	16	0.00041	0.028	15.9	1.2	1	23	370	392	370	392	0.97
13	16	0.0049	0.32	12.5	6.1	1	23	398	420	398	420	0.98
14	16	0.00033	0.022	16.2	0.6	1	23	427	449	427	449	0.99
15	16	4.5e-05	0.003	18.9	1.4	1	23	472	494	472	494	0.98
16	16	9.1e-05	0.006	17.9	1.8	1	23	500	522	500	522	0.98

Sequence Information

Coding Sequence: ATGAATCCTGTGGAATATTGTGAAAAAATCGAAAATGGCGTTAAAGATATTAAAACAGAAGATATGGAAATGGTGGAAATCAAACTGGAGGACTTGCATCACTCAATAGAAATTAAGGAAGAGACTTTTATCGACGAATCTCCTTTCGATGAGGATTACGAGATTACACAAAGttgtaaacaatttaaatgCAGGGTATGTGATCTAATATTTACCGATAAACTTCAACTGAAAGAACACACAAAATTGCATTCCGTCGGGAAGCGATTTTTGTGTACAATTTGTGGTCGCACATTTTCGGTTAAAACATCCCTTAGGAACCATTTAAGGGTACATACTGGTGAGAAGCCGTTTTCTTGTGAGTTATGTGAATACAAAACTCGACAGAAGGGAAATCTCAAGCATCATTTAcgaactcatactggtgagaagcCATTTTCCTGCGATGTTTGCGACTTCAAAAGTgcccaaaaacgaaatttgaaatCTCACTTATTGAATCATTTTGGTGAGAAGCCGTTCAGTTGTGAGCTTTGCgattttaaatgtttacaattaataacttTGAAAGACCATTTGCGaattcatacaggcgaaaaaccatttgggTGTGATATTTGCGATTTTAGGAGTTCTCGGAAAGGAAATTTGAAAATCCATATTCTAACTCATACAGGGGAAAAACCTTTGCAGTGTGAAATATGCGACTTTAAATGTTTACATTCCACAACTTTAAGGAACCACATGGTAACTCATACCGGGGAAAAACGTTTTGCCTGtgaattttgcaactttaaatcggTACATAAAGCAAGTCTGAAATATCACATGGTAACTCATACTGGGGAGAAACCGCTTtcgtgtgaaatttgcgactttAAGTGTATCCAAATGGGAAGCTTGAAAAACCATCTACTGACCCATACGGGCGAAAAACCGTTCGCATGCACGATTTGCAACTACAAAAGTTCgcaaaaaggaaatttaaaaattcatcttGTAACTCACAGTACCGAGAAAccgttcaaatgtgaaatttgcgactttAAATGTTCCCATTTAACAACCTTAAAAAACCACATTGTAACACATTCCGGAGAAAAACCGTACGCCTGTGAATTTTGCGACTACAGGAGCTTTCAAAAGGGAAATTTAAGAACTCACTTACTCACCCATTCGGGCAAAAAACCGTTCAAGTGCAAAGTTTGTAACTTTAGTTGTTCCCACGTAACAACTTTGAAAAACCACATGGTAAGTCATACAGGTGAGAAATTCGCCTACACCTGCGGAGTTTGCGACTTTAAAAGTGCTCAAAAGCGGACCTTAAAAGCTCATTTATTAACCCATACTTCGGAAAAACCGTGTGACATGTCCATCGTGAAATCATCGATGACTCATATAGAcgataaaatatttgtttgcaAAATATGCGACTTTAAAACTTCCCAAAAGGATCTTCTAAAGTCTCACTTAAGTACCCATACTGCCGAGAAGTCTTTCGTTTGTGATATTTGTGGATTTAAATGCTATCAAAAGGGATATTTGAGGGTGCATTTACTAACGCACAGTGGCGAAAAATCTCCCAAAAGTTAA
Protein Sequence: MNPVEYCEKIENGVKDIKTEDMEMVEIKLEDLHHSIEIKEETFIDESPFDEDYEITQSCKQFKCRVCDLIFTDKLQLKEHTKLHSVGKRFLCTICGRTFSVKTSLRNHLRVHTGEKPFSCELCEYKTRQKGNLKHHLRTHTGEKPFSCDVCDFKSAQKRNLKSHLLNHFGEKPFSCELCDFKCLQLITLKDHLRIHTGEKPFGCDICDFRSSRKGNLKIHILTHTGEKPLQCEICDFKCLHSTTLRNHMVTHTGEKRFACEFCNFKSVHKASLKYHMVTHTGEKPLSCEICDFKCIQMGSLKNHLLTHTGEKPFACTICNYKSSQKGNLKIHLVTHSTEKPFKCEICDFKCSHLTTLKNHIVTHSGEKPYACEFCDYRSFQKGNLRTHLLTHSGKKPFKCKVCNFSCSHVTTLKNHMVSHTGEKFAYTCGVCDFKSAQKRTLKAHLLTHTSEKPCDMSIVKSSMTHIDDKIFVCKICDFKTSQKDLLKSHLSTHTAEKSFVCDICGFKCYQKGYLRVHLLTHSGEKSPKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292195;
90% Identity: iTF_01294616;
80% Identity: iTF_01294616;