Rful006693.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:4574217-4575850[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0017 0.05 14.9 0.7 1 23 62 84 62 84 0.97 2 15 3.5e-06 0.0001 23.4 0.9 1 23 90 112 90 112 0.95 3 15 3.7e-05 0.0011 20.2 4.0 1 23 118 140 118 140 0.98 4 15 0.0015 0.042 15.1 1.1 1 23 146 168 146 168 0.97 5 15 0.37 11 7.6 2.1 1 23 174 196 174 196 0.97 6 15 0.00016 0.0047 18.1 0.4 3 23 204 224 202 224 0.98 7 15 0.2 5.7 8.4 4.2 2 23 231 252 230 252 0.96 8 15 0.027 0.77 11.2 2.5 1 23 258 280 258 280 0.97 9 15 0.00063 0.018 16.3 1.7 2 23 287 308 286 308 0.97 10 15 0.00016 0.0046 18.2 0.5 1 23 314 336 314 336 0.97 11 15 0.00031 0.0089 17.3 0.6 1 23 370 392 370 392 0.97 12 15 0.0099 0.29 12.5 6.9 1 23 398 420 398 420 0.98 13 15 0.0019 0.054 14.8 0.3 1 23 427 449 427 449 0.98 14 15 0.0039 0.11 13.8 0.9 1 23 472 494 472 494 0.98 15 15 0.00033 0.0095 17.2 1.9 1 23 500 522 500 522 0.98
Sequence Information
- Coding Sequence
- ATGAATCCAGTGGAATTTAGTGAAAAAATCGAAAATGACGTTAAAGATATTAAAACAGAAGAAATGGAAGTGGTGGAAATCAAACTGGAGGACTTGCATCACTCAATAGAAATTAAGGAAGAGACTTTTATCGACGAATCTCCTGTGGACGAGGATTACAGGATTACAGAAATATGCAAGCAATTTAAATGCAGGGTATGTGACCTAATATTTACCGATAAATTAGAACTGAAAGAACACTCAAAATTGCATTCCATCGGGAAGCGATTTTTGTGTACCGTTTGTGGTCGTACGTTTTCGGTTAAAACGTCCCTTAGGAACCATTTAAGGGTGCATACTGGTGAAAAGCCGTTTTCGTGTGAGTTGTGTGACTACAAAACTCGGCAGAAGGGAAATCTTAAGCATCATTTGCGAACTCATACTGGCGAAAAACCATTTTCATGCGATGTTTGCGACTTCAAAAGTGCCCAAAAACGAAATTTGAAGTCTCACTTACTGAATCATTTTGGTGAGAAGCCGTTCAGGTGTGAGCTTTGCGATTTTAAATGTTTACAGTTAATAACCCTGAAAGACCACTTGCGAATTCATACGGGCGAAAAACCATTTGGGTGCGAAATTTGCGATTTTAGGAGTTCCCGAAAGGGAAATTTGAAAATCCATATTTTGACCCATACTGGGGAAAAACCCTTGCAGTGTGAAATATGCGACTTTAAATGTTTACATTCCACAACTTTGAGGAACCACATGGTGACCCATACCGGGGAAAAACGTTTTGCTTGTGAATTTTGCAACTTTAAATCCGTACATAAAGCAAGTCTGAAATATCACATGGTAACTCACACCGGGGAAAAACCGCTTTCGTGTGAAATATGCGACTTTAAGTGTATTCAAAAGGGAAGCTTGAAAAACCACTTACTGACCCATACAGGGGAAAAACCGTTCGCCTGCACGATTTGCAATTACAAAAGCTCGCAGAAAGGAAATTTAAAAATTCATCTTGTCACTCACAGTACCGAAAAACCGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACCATATCGTAACTCATTCCGGCGAAAAACCGTACGCCTGTGAAGTTTGCGACTACCGCAGCTTCCAAAAGGGAAATTTAAGAACTCACCTACTCACCCATTCAGGGAAAAAACCGTTCAAGTGCAAAATTTGTAACTTCAAGTGTTCCCACGTAACAACTTTAAAAAACCACATGGTTACTCATACAGGTGAAAAGCACGCCTACGCCTGCGGAGTTTGCGACTTCAAAAGTGCCCAAAAGCGGACCCTAAAAGCTCATTTATTAACTCACACTTCCGAAAAACCGTGTGACATTTCCAACCTGAAATCGTCCGTAAGTCGTACAGACGATAAAATATTTGTTTGCAATACGTGCGACTTTAAAACGTCCCAAAAAGATGTTCTAAAGTCTCACTTAGGTACTCATACTGCGGAGAAGTTTTTCGTCTGTGATGTTTGTGGATTTAAATGCTATCAAAAGGGATATTTGAAAGTGCATTTACTAACTCACAGTGGCAAAAAATCGCTTAAAAGTTAA
- Protein Sequence
- MNPVEFSEKIENDVKDIKTEEMEVVEIKLEDLHHSIEIKEETFIDESPVDEDYRITEICKQFKCRVCDLIFTDKLELKEHSKLHSIGKRFLCTVCGRTFSVKTSLRNHLRVHTGEKPFSCELCDYKTRQKGNLKHHLRTHTGEKPFSCDVCDFKSAQKRNLKSHLLNHFGEKPFRCELCDFKCLQLITLKDHLRIHTGEKPFGCEICDFRSSRKGNLKIHILTHTGEKPLQCEICDFKCLHSTTLRNHMVTHTGEKRFACEFCNFKSVHKASLKYHMVTHTGEKPLSCEICDFKCIQKGSLKNHLLTHTGEKPFACTICNYKSSQKGNLKIHLVTHSTEKPFXXXXXXXXXXXXXXXXNHIVTHSGEKPYACEVCDYRSFQKGNLRTHLLTHSGKKPFKCKICNFKCSHVTTLKNHMVTHTGEKHAYACGVCDFKSAQKRTLKAHLLTHTSEKPCDISNLKSSVSRTDDKIFVCNTCDFKTSQKDVLKSHLGTHTAEKFFVCDVCGFKCYQKGYLKVHLLTHSGKKSLKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01293174; iTF_01294616; iTF_01294111;
- 90% Identity
- iTF_01293174;
- 80% Identity
- iTF_01293174;