Rful006693.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:4574217-4575850[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0083 3.7 8.6 0.0 21 45 114 138 108 141 0.91 2 8 0.0012 0.54 11.3 0.0 21 50 142 170 138 174 0.88 3 8 2.1 9.4e+02 0.9 0.0 21 44 198 221 188 225 0.74 4 8 0.41 1.9e+02 3.2 0.1 21 44 226 249 222 255 0.90 5 8 0.54 2.5e+02 2.8 0.0 21 44 282 305 278 310 0.86 6 8 0.039 18 6.4 0.0 21 47 310 336 306 342 0.85 7 8 0.04 18 6.4 0.0 21 48 366 392 363 398 0.83 8 8 1.8 8.3e+02 1.1 0.1 26 46 428 448 419 455 0.79
Sequence Information
- Coding Sequence
- ATGAATCCAGTGGAATTTAGTGAAAAAATCGAAAATGACGTTAAAGATATTAAAACAGAAGAAATGGAAGTGGTGGAAATCAAACTGGAGGACTTGCATCACTCAATAGAAATTAAGGAAGAGACTTTTATCGACGAATCTCCTGTGGACGAGGATTACAGGATTACAGAAATATGCAAGCAATTTAAATGCAGGGTATGTGACCTAATATTTACCGATAAATTAGAACTGAAAGAACACTCAAAATTGCATTCCATCGGGAAGCGATTTTTGTGTACCGTTTGTGGTCGTACGTTTTCGGTTAAAACGTCCCTTAGGAACCATTTAAGGGTGCATACTGGTGAAAAGCCGTTTTCGTGTGAGTTGTGTGACTACAAAACTCGGCAGAAGGGAAATCTTAAGCATCATTTGCGAACTCATACTGGCGAAAAACCATTTTCATGCGATGTTTGCGACTTCAAAAGTGCCCAAAAACGAAATTTGAAGTCTCACTTACTGAATCATTTTGGTGAGAAGCCGTTCAGGTGTGAGCTTTGCGATTTTAAATGTTTACAGTTAATAACCCTGAAAGACCACTTGCGAATTCATACGGGCGAAAAACCATTTGGGTGCGAAATTTGCGATTTTAGGAGTTCCCGAAAGGGAAATTTGAAAATCCATATTTTGACCCATACTGGGGAAAAACCCTTGCAGTGTGAAATATGCGACTTTAAATGTTTACATTCCACAACTTTGAGGAACCACATGGTGACCCATACCGGGGAAAAACGTTTTGCTTGTGAATTTTGCAACTTTAAATCCGTACATAAAGCAAGTCTGAAATATCACATGGTAACTCACACCGGGGAAAAACCGCTTTCGTGTGAAATATGCGACTTTAAGTGTATTCAAAAGGGAAGCTTGAAAAACCACTTACTGACCCATACAGGGGAAAAACCGTTCGCCTGCACGATTTGCAATTACAAAAGCTCGCAGAAAGGAAATTTAAAAATTCATCTTGTCACTCACAGTACCGAAAAACCGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACCATATCGTAACTCATTCCGGCGAAAAACCGTACGCCTGTGAAGTTTGCGACTACCGCAGCTTCCAAAAGGGAAATTTAAGAACTCACCTACTCACCCATTCAGGGAAAAAACCGTTCAAGTGCAAAATTTGTAACTTCAAGTGTTCCCACGTAACAACTTTAAAAAACCACATGGTTACTCATACAGGTGAAAAGCACGCCTACGCCTGCGGAGTTTGCGACTTCAAAAGTGCCCAAAAGCGGACCCTAAAAGCTCATTTATTAACTCACACTTCCGAAAAACCGTGTGACATTTCCAACCTGAAATCGTCCGTAAGTCGTACAGACGATAAAATATTTGTTTGCAATACGTGCGACTTTAAAACGTCCCAAAAAGATGTTCTAAAGTCTCACTTAGGTACTCATACTGCGGAGAAGTTTTTCGTCTGTGATGTTTGTGGATTTAAATGCTATCAAAAGGGATATTTGAAAGTGCATTTACTAACTCACAGTGGCAAAAAATCGCTTAAAAGTTAA
- Protein Sequence
- MNPVEFSEKIENDVKDIKTEEMEVVEIKLEDLHHSIEIKEETFIDESPVDEDYRITEICKQFKCRVCDLIFTDKLELKEHSKLHSIGKRFLCTVCGRTFSVKTSLRNHLRVHTGEKPFSCELCDYKTRQKGNLKHHLRTHTGEKPFSCDVCDFKSAQKRNLKSHLLNHFGEKPFRCELCDFKCLQLITLKDHLRIHTGEKPFGCEICDFRSSRKGNLKIHILTHTGEKPLQCEICDFKCLHSTTLRNHMVTHTGEKRFACEFCNFKSVHKASLKYHMVTHTGEKPLSCEICDFKCIQKGSLKNHLLTHTGEKPFACTICNYKSSQKGNLKIHLVTHSTEKPFXXXXXXXXXXXXXXXXNHIVTHSGEKPYACEVCDYRSFQKGNLRTHLLTHSGKKPFKCKICNFKCSHVTTLKNHMVTHTGEKHAYACGVCDFKSAQKRTLKAHLLTHTSEKPCDISNLKSSVSRTDDKIFVCNTCDFKTSQKDVLKSHLGTHTAEKFFVCDVCGFKCYQKGYLKVHLLTHSGKKSLKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292195;
- 90% Identity
- iTF_01292195;
- 80% Identity
- iTF_01292195;