Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996555.1:5760596-5766993[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.2e-05 0.0012 20.0 2.3 3 23 174 194 172 194 0.97

2 12 0.00011 0.0031 18.7 1.7 1 23 200 222 200 222 0.98

3 12 9.2e-05 0.0026 18.9 2.1 1 23 271 293 271 293 0.98

4 12 2.6e-07 7.4e-06 27.0 3.4 1 23 304 326 304 326 0.99

5 12 0.00023 0.0066 17.7 1.6 1 23 332 354 332 354 0.94

6 12 2.1e-06 6e-05 24.1 1.1 1 23 360 382 360 382 0.97

7 12 2.3e-05 0.00068 20.8 0.4 1 23 388 410 388 410 0.95

8 12 0.00075 0.022 16.1 0.2 3 23 418 438 416 438 0.96

9 12 6.9e-06 0.0002 22.5 2.9 1 23 444 466 444 466 0.98

10 12 0.0003 0.0087 17.3 0.7 1 23 472 494 472 494 0.99

11 12 2.8e-06 8e-05 23.7 0.7 1 23 500 522 500 522 0.98

12 12 8.1e-07 2.3e-05 25.4 0.5 1 23 528 550 528 550 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.2e-05	0.0012	20.0	2.3	3	23	174	194	172	194	0.97
2	12	0.00011	0.0031	18.7	1.7	1	23	200	222	200	222	0.98
3	12	9.2e-05	0.0026	18.9	2.1	1	23	271	293	271	293	0.98
4	12	2.6e-07	7.4e-06	27.0	3.4	1	23	304	326	304	326	0.99
5	12	0.00023	0.0066	17.7	1.6	1	23	332	354	332	354	0.94
6	12	2.1e-06	6e-05	24.1	1.1	1	23	360	382	360	382	0.97
7	12	2.3e-05	0.00068	20.8	0.4	1	23	388	410	388	410	0.95
8	12	0.00075	0.022	16.1	0.2	3	23	418	438	416	438	0.96
9	12	6.9e-06	0.0002	22.5	2.9	1	23	444	466	444	466	0.98
10	12	0.0003	0.0087	17.3	0.7	1	23	472	494	472	494	0.99
11	12	2.8e-06	8e-05	23.7	0.7	1	23	500	522	500	522	0.98
12	12	8.1e-07	2.3e-05	25.4	0.5	1	23	528	550	528	550	0.98

Sequence Information

Coding Sequence: ATGGAAGAAAGTTCATTAACGAATGTGTGTCGGGCTTGTATGACAGAGCAAGGTGAATTTCAGTCAGTTTTCATGAGCGACGAAAATAGTGGCTTGACGATTCATTTAGCTGAAATGATTATGGCGTATGCGTCTGTTCAAATCACATTCGGAGACGGACTGCCTGAACAAATTTGTACATCTTGTGCCGAGAAAGCTGTAAATTTGTATTTGTTTAAATTGTGTTGTGAGGAATCGGACACTTCGTTGCGACAACGTTTGGGTAAATCACCTTTGAATAAGATGTATAGCATAACCGAAGAGATGCTGGCGGCCGAGAAGCTTGAAAGGGAAGCTTTTATAAGTAGATTGATTAAACCGGAAGTTAGTATTGAAGAAATTAAAGATGAATCCGATAACGATTTTTCGAATATCGAGATTGTGGGTGCCGATGATTTGGATACGTCGCTGGAGGATTGTACTCAAGTGGAGACTGATGAATCGGAAGTAAAAAACGAGGGGACGAAACACGTAATATTTTGTGAAATTTGTAATAAGGGGTTTAATCGTGTAAGCCATTTAAATCGGCACAAAAAAATTCACCTTCCTCGTAAAATGTACCACTGTGACATTTGTAAGAAAGCTTTCACCAGAAACGATATTTTGATTCGTCACTTGAGTACCCACGACGATAAAGATTCAAACTCGGCTTATGAAATTTTAAAGGAAATTAAGAACGAAGATCAGGTTACTGCGTTTGAAAGTATCTTGGACGAGCAGGTCATGGTGGACAGTTTAATTGAAATCAAAGCGGAGGAAGAAGGTGACGATTACAGTTGTTCAGAATGTTACAGATCCTTTCAAAATAAGGACGATTTCAATTCTCATATGCAACTCCACGAAATTAAGATGAAAGGGACACCGGGAAATTATAAGTGTCCAAATTGTAACAAAAAGTTTAGTAAACCTTCTCACTTGACTCGACACGTAAAAATTCATGCAGCAGTTAAACCTTTCTTGTGCAAGTTGTGCCATAAGGGATTTGCTCGTAGCGAACAATTAAGCAATCATTTGAATGCGCATACTGGAATAAAACCGCACGTTTGTGGGAGCTGTGGTAAAGGTTTCAATCAAATATCCAATTTGAAAGACCACATGAGAACCCACAATGGTGAAAAGCCATACCTTTGTTCTGTCTGTGGGAAAGGTTTCAACCAACTGGGCAATTTACGACAGCACACCATCCGACACACAGGAGTCAAAGCTCATTTATGCAGTATTTGCGGAAATGGATTTGCCAGCAAAGGAGAACTGGGTGCTCATTTACGTAAACATACAGGGGCGCGACCTTTTGTGTGTTCAATTTGCAATCACGGTTTCACCACATCAAGTTCTCTAACGAAGCATAAACGTATCCACTCTGGAGAAAAGCCCTACGAATGTGAAGTGTGTAAAATGCGGTTTTCTAGATCCGGTATTTTAGCCCGCCATAAACGTACTCACACGGGGGAAAAACCCTACGTGTGCCAATATTGCTCAAAAGCCTTCTCTCAGTCGAACGACCTTAGTTCACATCTACGTATTCACACCGGTGAGAAGCCATACATTTGTGACATTTGTGGACAAGCCTTCCGGCAAAGTTCGGCTTTAAAAACGCATAAAAAAACTCACATAGATCGTTCTTCGATTTTGGAAATTGAGCGATCGAGAAATTTTGTTCCCATGATTCACAATTCATATGTGAATGTTTTACCGTGA
Protein Sequence: MEESSLTNVCRACMTEQGEFQSVFMSDENSGLTIHLAEMIMAYASVQITFGDGLPEQICTSCAEKAVNLYLFKLCCEESDTSLRQRLGKSPLNKMYSITEEMLAAEKLEREAFISRLIKPEVSIEEIKDESDNDFSNIEIVGADDLDTSLEDCTQVETDESEVKNEGTKHVIFCEICNKGFNRVSHLNRHKKIHLPRKMYHCDICKKAFTRNDILIRHLSTHDDKDSNSAYEILKEIKNEDQVTAFESILDEQVMVDSLIEIKAEEEGDDYSCSECYRSFQNKDDFNSHMQLHEIKMKGTPGNYKCPNCNKKFSKPSHLTRHVKIHAAVKPFLCKLCHKGFARSEQLSNHLNAHTGIKPHVCGSCGKGFNQISNLKDHMRTHNGEKPYLCSVCGKGFNQLGNLRQHTIRHTGVKAHLCSICGNGFASKGELGAHLRKHTGARPFVCSICNHGFTTSSSLTKHKRIHSGEKPYECEVCKMRFSRSGILARHKRTHTGEKPYVCQYCSKAFSQSNDLSSHLRIHTGEKPYICDICGQAFRQSSALKTHKKTHIDRSSILEIERSRNFVPMIHNSYVNVLP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00268805; iTF_00927942; iTF_00271529; iTF_01294090; iTF_00270702; iTF_00272112; iTF_00270131; iTF_00269407;
90% Identity: iTF_00268805; iTF_00927942; iTF_00271529; iTF_01294090; iTF_00270702; iTF_00272112; iTF_00270131; iTF_00269407;
80% Identity: -