Basic Information

Insect: Cantharis lateralis
Gene Symbol: -
Assembly: GCA_963170105.1
Location: OY720624.1:5609417-5612309[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.45 6.4e+02 1.3 0.0 22 44 169 191 158 198 0.75

2 10 1.9 2.6e+03 -0.6 0.0 26 47 272 293 267 299 0.87

3 10 2.3 3.3e+03 -0.9 0.0 27 52 306 331 304 333 0.82

4 10 0.8 1.1e+03 0.6 0.0 23 48 330 355 324 359 0.84

5 10 0.011 15 6.5 0.0 23 46 358 381 353 387 0.86

6 10 0.019 27 5.8 0.0 21 48 384 410 379 414 0.87

7 10 0.82 1.2e+03 0.5 0.0 23 47 442 466 435 473 0.81

8 10 0.62 8.8e+02 0.9 0.1 21 43 468 490 455 495 0.81

9 10 0.01 14 6.7 0.2 21 52 496 527 488 529 0.86

10 10 0.0021 3 8.8 0.1 21 43 524 546 520 551 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.45	6.4e+02	1.3	0.0	22	44	169	191	158	198	0.75
2	10	1.9	2.6e+03	-0.6	0.0	26	47	272	293	267	299	0.87
3	10	2.3	3.3e+03	-0.9	0.0	27	52	306	331	304	333	0.82
4	10	0.8	1.1e+03	0.6	0.0	23	48	330	355	324	359	0.84
5	10	0.011	15	6.5	0.0	23	46	358	381	353	387	0.86
6	10	0.019	27	5.8	0.0	21	48	384	410	379	414	0.87
7	10	0.82	1.2e+03	0.5	0.0	23	47	442	466	435	473	0.81
8	10	0.62	8.8e+02	0.9	0.1	21	43	468	490	455	495	0.81
9	10	0.01	14	6.7	0.2	21	52	496	527	488	529	0.86
10	10	0.0021	3	8.8	0.1	21	43	524	546	520	551	0.90

Sequence Information

Coding Sequence: atggaagaaAATTCATTAACGAATGTGTGTCGGGCTTGTATGACAGAGCAAGGTGAGTTCCAATCAGTTTTCGTTACTGACGAAAACAGTGGTTTGACCATTCATTTGGCTGAGATGATAATGGCGTATGCGTCTGTTCAAATCACATTGGGAGACGGGCTACCCGAACAAATTTGTACATCTTGTGCGGAGAAAgctgtaaatttgtatttgtttaaattgtgtTGTGAGGAATCGGATACTTCTTTTCGGCAACGTTTGGGTAAATCACCGTTGAACAAGATGTACAGCATAACCGAAGAGATGCTGGCGGCCGAGAAGCTCGAAAGGGAGGCTTTCATTAGCAGGTTGATTAAACCCGAAGTTAGTATCGAAGAAATTAAAGATGAATCGGATAACGATTTTTCAAACATTGAAATTGTGGGTGCAGATGATTTGGATACGTCGCTGGAGGATTGTACTCAGTTGGAGGTGGAAGAACCCGAAGTAAAAAACGACACGATGAAACAACAAGCATTTTGTGATATCTGTAATAAGGGATTTTATCGTGTGAGCCATTTAAATcgtcataaaaaaattcacctTCCTCGTAAAATGTACCACTGCGACGTTTGTCAGAAAGCTTTCACCAGAAATGATATCTTGATTCGTCACTTAAGCACCCACGATAGCAAAGATTCAAACTCGgcttatgaaattttaaaagaaatcaaaaacgAGGATCAAAATACTTCGTTTGAAAGTATTTTAGACGAGGAGGGCATGGTGGAGActttaattgaaatcaaagCCGAGGAAGAAGGTGACAACTTGAAGTGTTCGGAATGTTACAAGACGTTTCAAAATAAAGACGATTTGAATTCCCACATGCAGCTTCAcgaaattaaactaaaaggGACTCCAGGAAATTATAAGTGCCcaaattgcaacaaaaaatttagcaaaCCTTCCCACCTGACGCGACATGTAAAAATTCACGCAGAAGTTAAACCATTTTTGTGCAAGTTGTGCCACAAGGGATTTGCCCGTAGCGAACAATTAAGTAATCACTTGAATGCACACACTGGAGTGAAACCGCACACTTGTGGAATCTGCGGTaaaggtttCAATCAAATATCCAACCTGAAAGATCACATGAGAACTCACAATGGTGAAAAACCGTACCTCTGTTCTGTCTGTGGAAAAGGCTTCAATCAATTAGGTAATCTGCGACAACACACCATCCGACACACGGGAGTTAAAGCTCACCTGTGCAGCATTTGCGGAAATGGGTTTGCCAGCAAAGGAGAACTGGGTGCCCATTTACGAAAACATacagGTGCAAGACCGTTCGTGTGttcaatttgcaatcatgGTTTTACCACGTCGAGTTCTCTAACGAAACACAAACGTATCCACTCGGGAGAAAAACCCTATGAATGTGAAGTGTGTAGAATGCGGTTTTCTAGATCTGGTATTTTAGCTCGCCACAAGCGCACTCACACGGGTGAAAAACCCTACGTTTGCCAATATTGCTCAAAAGCCTTCTCTCAGTCGAACGACCTTAGTTCACATCTGCGTATACACACCGGTGAGAAGCCATACATTTGTGATATTTGTGGACAAGCCTTTAGGCAAAGTTCGGCTTtaaaaacacataaaaaaaCTCATATAGATCGTTCCTCGATTTTAGAAATTGAGAGATCGAGAAATTTTGTTCCCATGATTCACAATTCGTTTGTGAATGTTTTACCATGA
Protein Sequence: MEENSLTNVCRACMTEQGEFQSVFVTDENSGLTIHLAEMIMAYASVQITLGDGLPEQICTSCAEKAVNLYLFKLCCEESDTSFRQRLGKSPLNKMYSITEEMLAAEKLEREAFISRLIKPEVSIEEIKDESDNDFSNIEIVGADDLDTSLEDCTQLEVEEPEVKNDTMKQQAFCDICNKGFYRVSHLNRHKKIHLPRKMYHCDVCQKAFTRNDILIRHLSTHDSKDSNSAYEILKEIKNEDQNTSFESILDEEGMVETLIEIKAEEEGDNLKCSECYKTFQNKDDLNSHMQLHEIKLKGTPGNYKCPNCNKKFSKPSHLTRHVKIHAEVKPFLCKLCHKGFARSEQLSNHLNAHTGVKPHTCGICGKGFNQISNLKDHMRTHNGEKPYLCSVCGKGFNQLGNLRQHTIRHTGVKAHLCSICGNGFASKGELGAHLRKHTGARPFVCSICNHGFTTSSSLTKHKRIHSGEKPYECEVCRMRFSRSGILARHKRTHTGEKPYVCQYCSKAFSQSNDLSSHLRIHTGEKPYICDICGQAFRQSSALKTHKKTHIDRSSILEIERSRNFVPMIHNSFVNVLP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292068;
90% Identity: iTF_01292068;
80% Identity: iTF_00270131;