Basic Information

Insect: Cantharis nigra
Gene Symbol: -
Assembly: GCA_958510845.1
Location: OY294028.1:88024219-88027211[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.12 2.5e+02 2.7 0.0 13 44 159 191 157 199 0.75

2 11 3.8 8.3e+03 -2.1 0.0 27 44 202 219 197 222 0.79

3 11 1.3 2.8e+03 -0.6 0.0 26 47 272 293 267 299 0.87

4 11 1.6 3.5e+03 -0.9 0.0 27 52 306 331 304 333 0.82

5 11 0.54 1.2e+03 0.6 0.0 23 48 330 355 324 359 0.84

6 11 0.0073 16 6.5 0.0 23 46 358 381 353 387 0.86

7 11 0.013 28 5.8 0.0 21 48 384 410 379 414 0.87

8 11 0.56 1.2e+03 0.5 0.0 23 47 442 466 435 473 0.81

9 11 0.42 9.2e+02 0.9 0.1 21 43 468 490 455 495 0.81

10 11 0.0068 15 6.7 0.2 21 52 496 527 488 529 0.86

11 11 0.0014 3.1 8.8 0.1 21 43 524 546 520 551 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.12	2.5e+02	2.7	0.0	13	44	159	191	157	199	0.75
2	11	3.8	8.3e+03	-2.1	0.0	27	44	202	219	197	222	0.79
3	11	1.3	2.8e+03	-0.6	0.0	26	47	272	293	267	299	0.87
4	11	1.6	3.5e+03	-0.9	0.0	27	52	306	331	304	333	0.82
5	11	0.54	1.2e+03	0.6	0.0	23	48	330	355	324	359	0.84
6	11	0.0073	16	6.5	0.0	23	46	358	381	353	387	0.86
7	11	0.013	28	5.8	0.0	21	48	384	410	379	414	0.87
8	11	0.56	1.2e+03	0.5	0.0	23	47	442	466	435	473	0.81
9	11	0.42	9.2e+02	0.9	0.1	21	43	468	490	455	495	0.81
10	11	0.0068	15	6.7	0.2	21	52	496	527	488	529	0.86
11	11	0.0014	3.1	8.8	0.1	21	43	524	546	520	551	0.90

Sequence Information

Coding Sequence: atggaagAAAATTCATTAACGAATGTGTGTCGGGCTTGTATGACAGAGCAAGGTGAGTTTCAATCGGTTTTCGTGACTGACGAAAACAGTGGTTTGACCATTCATTTGGCCGAGATGATAATGGCGTATGCGTCTGTTCAAATCACATTGGGAGACGGGCTACCGGAACAAATTTGTACATCTTGTGCGGAGAAAGctgtaaatttgtatttgtttaaGTTGTGTTGTGAGGAATCGGATACTTCTTTTCGACAACGTTTGGGTAAATCACCATTGAACAAGATGTACAGCATAACCGAAGAGATGCTAGCGGCCGAGAAGCTCGAAAGGGAGGCTTTCATAAGCAGGTTGATTAAACCGGAAGTTAGTATCGAAGAAATTAAAGATGAATCGGATAACGATTTTTCAAACATTGAGATTGTGGGTGCCGACGATTTGGATACGTCGCTGGAGGATTGTACTCAGTTGGAGGTGGAAGAACCCGATGGAAAAAGCGACACGATGAAACAACAAGCATTTTGTGATATCTGTAATAAGGGATTTTATCGTGTGAGTCATTTAAATCGtcataaaaaaattcatctTCCTCGTAAAATGTACCATTGTGACATTTGTCAGAAAGCTTTCACCAGAAATGATATTTTGATTCGTCACTTAAGCACTCACGATGGTAAAGATTCAAATTCGGcttatgaaatattaaaagaaataaagaatgAGGATCAAAATACTTCGTTTGAAAGTATTTTAGATGAGGAGGGCATGGTGGAAACCTTAATCGAAATCAAAGCCGAGGAAGAAGGTGACAACTTGAAGTGTTCGGAATGTTACAAGACCTTTCAAAACAAAGACGATTTGAATTCTCACATGCAGCTTCACGAAATTAAGCTAAAAGGGACTCCGGGAAATTATAAGTGCCCgaattgtaacaaaaaatttagtaaacctTCCCACCTGACTCGACACGTAAAAATTCACGCAGAAGTTAAACCATTTTTGTGCAAGTTGTGCCATAAGGGCTTTGCTCGTAGCGAACAATTAAGTAATCACTTGAATGCGCACACTGGAGTGAAACCTCACACCTGTGGGATCTGCGGTAAAGGTTTCAATCAAATATCCAACTTGAAAGATCACATGAGAACTCACAATGGTGAAAAACCGTATCTTTGCTCTGTCTGTGGAAAAGGCTTCAATCAATTAGGAAATTTGCGACAACACACCATCCGACACACGGGAGTTAAAGCTCACCTGTGCAGCATTTGCGGAAATGGGTTTGCCAGCAAAGGAGAACTGGGTGCTCATTTACGAAAACACACAGGCGCAAGACCGTTTGTGTGTTCGATTTGCAATCACGGTTTTACCACATCGAGTTCTCTAACGAAACACAAACGTATCCACTCGGGAGAAAAACCCTATGAATGTGAAGTGTGCAGAATGCGGTTTTCTAGATCCGGTATTTTAGCTCGCCACAAACGTACCCATACAGGTGAAAAACCCTACGTTTGCCAATATTGCTCAAAAGCCTTCTCTCAGTCAAACGACCTCAGTTCACATTTACGCATTCACACCGGTGAGAAGCCATACATTTGTGATATTTGTGGACAAGCCTTTAGGCAAAGTTCGGCTTTGAAAACGCATAAAAAAACTCACATAGATCGTTCTTCGATCTTAGAAATCGAGAGAACGAGAAATTTTGTTCCCATGATTCACAATTCGTTTGTGAATGTTTTACCATGA
Protein Sequence: MEENSLTNVCRACMTEQGEFQSVFVTDENSGLTIHLAEMIMAYASVQITLGDGLPEQICTSCAEKAVNLYLFKLCCEESDTSFRQRLGKSPLNKMYSITEEMLAAEKLEREAFISRLIKPEVSIEEIKDESDNDFSNIEIVGADDLDTSLEDCTQLEVEEPDGKSDTMKQQAFCDICNKGFYRVSHLNRHKKIHLPRKMYHCDICQKAFTRNDILIRHLSTHDGKDSNSAYEILKEIKNEDQNTSFESILDEEGMVETLIEIKAEEEGDNLKCSECYKTFQNKDDLNSHMQLHEIKLKGTPGNYKCPNCNKKFSKPSHLTRHVKIHAEVKPFLCKLCHKGFARSEQLSNHLNAHTGVKPHTCGICGKGFNQISNLKDHMRTHNGEKPYLCSVCGKGFNQLGNLRQHTIRHTGVKAHLCSICGNGFASKGELGAHLRKHTGARPFVCSICNHGFTTSSSLTKHKRIHSGEKPYECEVCRMRFSRSGILARHKRTHTGEKPYVCQYCSKAFSQSNDLSSHLRIHTGEKPYICDICGQAFRQSSALKTHKKTHIDRSSILEIERTRNFVPMIHNSFVNVLP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292068;
90% Identity: iTF_01292068;
80% Identity: iTF_00271529;