Rfun007214.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- retn
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000005.1:7204236-7221371[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-19 8e-16 60.0 0.0 16 89 34 105 30 105 0.94 2 2 5.7 4e+04 -3.2 0.0 25 38 244 257 205 259 0.67
Sequence Information
- Coding Sequence
- ATGCACAAACAAACGTACGCAATGAAGCCCACGTATCAGTTAACTGAAGACAAATCTGTTACCGACACCAAGAGTCTTGATATTCCCACTACATCAGTACGATGCACACCAATAAACAGACTACCCATAATGGCTAAGTCAGTACTCGATCTCTACGAACTATATAACTTGGTTATTGCGAGAGGAGGACTAGTGGACGTAATCAATAAAAAACTGTGGCAGGAAATAATTAAAGGACTCCATTTGCCGTCATCCATCACATCTGCCGCATTCACACTTAGAACGCAATATATGAAGTACTTATACCCCTACGAGTGCGAAAAACGTCGGCTAAGCACTCCTGCCGAACTACAAGCTGCCATCGACGGCAACCGAAGGGAAGGTCGCCGAAGTAGTTACGGTCAATACGATTCCATTCAAAGATCTCCAAACCCCAACCTGCAGATGTCTCCTTTATCTTTAGTTTCTCAACAACAGCAGCAGCAATTGGCGGCTCGCATGATCAGCAGTACCATGAACCTCCACAACGGCGCCCACCACCCTAGTCATCCACAGCCCATGGGTCAGCCCAACAATGGCGGTCCTCTGCCGGGGCTAGCTCCGAGCGAATTCGAAGCGCGTATGATGGAATAcgtaaaattattgaataaggAAATAAGAAGCAGCTCGGCGGCTACTCCCCCGCGCCAGGGCGACATTTCGCCCCCGAACATTGCTTCCCCCTTGAATCAGCTAGACATGTCGCGAATGACCCTGTGGAACTTGTACAACAACAATCAGCCACCCCCTGTGGAGCCACAGAAGGAGCCCATAAATTTGTCGGAATCTTCTGCAGCGACGAAAAGGGAACCAGAATGTAGAGAATCGCCGCCTCCGCCAAAGCGCGTCACCAAAGACGAGGAAGACTCCGAGCCCGCCAAGCCCGTTTCACCCTCCACACACATCAAAATTAACAGTAGAGgCGATTCGCGCAACGGCGACAATTCCCTCGTAGTCAGTATGGAACTCAACGGAGTTACATATCAGGGGGTCTTGTTCGCCCAGAATTCGACTTCCAGCGGTCGGGCGACGTTGGCGTCTTAA
- Protein Sequence
- MHKQTYAMKPTYQLTEDKSVTDTKSLDIPTTSVRCTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGQYDSIQRSPNPNLQMSPLSLVSQQQQQQLAARMISSTMNLHNGAHHPSHPQPMGQPNNGGPLPGLAPSEFEARMMEYVKLLNKEIRSSSAATPPRQGDISPPNIASPLNQLDMSRMTLWNLYNNNQPPPVEPQKEPINLSESSAATKREPECRESPPPPKRVTKDEEDSEPAKPVSPSTHIKINSRGDSRNGDNSLVVSMELNGVTYQGVLFAQNSTSSGRATLAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00791865;
- 90% Identity
- iTF_01289533;
- 80% Identity
- -