Rmax002529.1
Basic Information
- Insect
- Resseliella maxima
- Gene Symbol
- MBD2
- Assembly
- GCA_029041755.1
- Location
- JAQOWM010000096.1:41538-43391[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-20 2.7e-17 62.7 0.0 1 70 5 69 5 82 0.91 2 2 0.00035 0.68 10.2 0.0 28 73 123 179 92 182 0.80
Sequence Information
- Coding Sequence
- atgAATATaacaattgaacgaaaaaaaacagaatgcAATGCACTGCCGAAAGGATGGCAACGCGAAGAGGTGCTACGAAAAACTGGATTGTCAGCAGGCAAAGTAGATGTTTATTATTACAGCCCAAGTGGtggtaaaattgaaacaaaatcgaaattagTACGTCAATTGGGTGAAACAATTGATCTATCAACGTTTGATTATCAATCGGGTCGTCACCAAATGCTCAATGTAAATCTAAATACTTCATGTCAACCATCGAGCAGCAGTCAATCGATGGTTAATCCATTCCAACGTAATTCGATACGACGTTCGATTCATGAATCACCAATGGGTCCACCATCGCCTATCGCATCAGGTGCATCAAGTCGAGGTATCAGAACAGATGTATCATTGGTGCCACCGATTCGGCAAACCGCTTCCATTTTTAAGCAACCAGTTACAGTTCATCGAAATCATGATTCCAAAGTTAAAAGTGATCTAAAGCATGGTACATCacaagaaaaaccaaaacaattaTTCTGGGAGAAGCGCTTAGAGGGTTTGAATGCTTGCGATATGGATGGCAATGAGTTTGGTCCAATCGAATTGCCGCGTGGTTTGAAACCAGTTGGaccaaatatcaataataGTACGCTGCTACAATCAGCCACAACAGCACTGCACTTGAATAATACAATAGCAATAACAGGACAAGCGGCACCAAAATCATCGCTCACATCGAATGCCGGCGTTTTCTTGAATCCAGAGCAACCACTCATGTATGCCGTCACAATAACAGAAGACGATATTCGGCGGCAAGAAGATCGAGTTACAAATGCTCGCAAAAAATTACAAGACGCACTTAAATGCTAa
- Protein Sequence
- MNITIERKKTECNALPKGWQREEVLRKTGLSAGKVDVYYYSPSGGKIETKSKLVRQLGETIDLSTFDYQSGRHQMLNVNLNTSCQPSSSSQSMVNPFQRNSIRRSIHESPMGPPSPIASGASSRGIRTDVSLVPPIRQTASIFKQPVTVHRNHDSKVKSDLKHGTSQEKPKQLFWEKRLEGLNACDMDGNEFGPIELPRGLKPVGPNINNSTLLQSATTALHLNNTIAITGQAAPKSSLTSNAGVFLNPEQPLMYAVTITEDDIRRQEDRVTNARKKLQDALKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00133242;
- 90% Identity
- iTF_00367216;
- 80% Identity
- -