Cnas004192.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- MBD2
- Assembly
- GCA_009176525.2
- Location
- NW:824308-826707[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-21 8.5e-18 63.4 0.0 1 70 5 69 5 83 0.90 2 2 0.00018 0.42 9.9 0.0 28 73 126 182 100 185 0.84
Sequence Information
- Coding Sequence
- atgaatataacaattgaacgaaagaaaactGATTGCAATGCACTGCCGAAGGGATGGCAACGCGAAGAGGTGCTACGAAAAACTGGACTATCAGCGGGCAAAGTAGATGTTTATTATTACAGCCCAAGTGGTGGTAAAgttgaaacaaaatcgaaattagtGCGTCAATTGGGCGAAACAATTGATCTATCAACGTTTGATTATCAATCGGGTCGTCATCAAATGTTCAATCCAAATTCATCTCCGTCTCCGTCTCCATGTCAACCATCGAGCAGCAGTCAATCGATGGTTAATCCATTTCAACGTCCTTCGATACGTCGCTCGATTCATGAAACACCAATGGGCCCACCTTCGCCTGTCACATCAGGTGCATCAAGTCGTGGTATTAGAACGGATGTTTCACTGGTTCCACCAATTAGACAAACAGCGTCCATATTTAAGCAACCGGTAACAGTTCATCGAAACCACGATTCAAAGGtgaaaaacgatttaaaacaTGGTACATCACAAGAAAAGCCGAAACAACTATTCTGGGAAAAGCGTTTAGAGGGTTTACATGCTTGCGATATGGATGGCAATGAATTTGGACCAATTGAACTGCCGCGCGGCTTGAAGCCGGTTGGAccaaatgtaaacaatggCACACTGCTACAGTCGGTCACAACGGCATTACATTTAAATACCACATTAGCAATAACAGGTCAAACAGCACCAAAACCAGCACTCACATCCAATGCAGGCGTATATTTGAATCCAGAACAACCTCTCATGCACGCCGTTACTATTACCGAAGATGACATTCGACGGCAAGAGGATCGCGTGACAAACGCTCGCAAAAAGCTACAAGACGCATTAAAGTGCTAA
- Protein Sequence
- MNITIERKKTDCNALPKGWQREEVLRKTGLSAGKVDVYYYSPSGGKVETKSKLVRQLGETIDLSTFDYQSGRHQMFNPNSSPSPSPCQPSSSSQSMVNPFQRPSIRRSIHETPMGPPSPVTSGASSRGIRTDVSLVPPIRQTASIFKQPVTVHRNHDSKVKNDLKHGTSQEKPKQLFWEKRLEGLHACDMDGNEFGPIELPRGLKPVGPNVNNGTLLQSVTTALHLNTTLAITGQTAPKPALTSNAGVYLNPEQPLMHAVTITEDDIRRQEDRVTNARKKLQDALKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00133242;
- 90% Identity
- iTF_01288132; iTF_00133242;
- 80% Identity
- -