Paur028968.1
Basic Information
- Insect
- Pyrausta aurata
- Gene Symbol
- -
- Assembly
- GCA_963584085.1
- Location
- OY757281.1:5858290-5860182[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0021 68 4.5 0.1 26 48 99 121 96 128 0.91 2 10 0.048 1.6e+03 0.2 0.0 21 46 183 208 179 211 0.84 3 10 0.00091 30 5.7 0.1 23 50 214 241 207 243 0.89 4 10 0.0043 1.4e+02 3.5 0.1 27 51 248 272 246 274 0.93 5 10 0.00021 6.9 7.7 0.0 25 50 274 299 272 301 0.90 6 10 0.067 2.2e+03 -0.3 0.1 26 48 343 365 333 365 0.76 7 10 9.4e-09 0.00031 21.6 0.4 20 48 365 393 358 397 0.92 8 10 0.055 1.8e+03 -0.0 0.1 25 48 400 423 394 429 0.85 9 10 0.45 1.5e+04 -2.9 0.0 26 40 430 444 424 451 0.71 10 10 0.081 2.6e+03 -0.6 0.0 26 49 457 480 446 483 0.84
Sequence Information
- Coding Sequence
- ATGGACAGTAAACCTGAACAAATTTATGTCAAACCCGAAATAAACATTGAAGTTGAAATTCAGCCGCTTAATGAAGTCGCAACTGAACATACAGACATTAAAACGGAACCATCAGATGTAAATTTTGAAGGAAAAGCTGTAGACAACTTGGTTATAAAACCGGAATTACCATTGCAATATTTTAATGACTTCCAACCGTCGCAGGAAGAAGAGTCATCTTCCACTGAAGCCAGACCAAAAAGATCGATAGAAATTGAAGGGAAAGTGTATGAGAAtggaaaaataaatagattgcAATGTCCACAATGTAGCAATACCTTTAAAAACCGAGCTAATCTTAAGTCACACCTAAAATTTGTACATTCCACAGAGAATGACGCAGTTGATTGTGATATATGTTTCAGAACATTTAAATCATTACTCCATTTGTATTCCCATAAAAGCTCAGTGCATGCTGGAGAAATGCAAGTAAACTGTGATTACTGTGAGAAAACGTTTgcaaataaaaagaaactaaaCAATCACATATTCTACTGCCATCCAGAAACAGAGGAAGATGTTAACTGCGAGGTCTGCACAAAGGTTTTCAAATCTAAATACCGTTTAAAAGTTCACATGAAGCAGGTACACCCTGAAGGCCAAACTGTTAACTGTCCAGAATGTCATAAAGAATTTAAGAATAGTATGTTACTGCAGCGACATATAAAATGGGCACACCCAGCAGATGGACTAATATACCGTTGTCCGCAATGTAACAGGGTCTTGCCTTCAATTGATGGGTATCGACGTCATATGAAAGCGGTGCACGGTGCCAAAAAAGTTACATGTGAAATATGTAACAAAGTTCTCAAGACTAACGGAAGTCTGAATCGCCATATGGCAACAGTACACAGTGCGGTTAAAACTGAACGAAAGAAGTACAAAACTGGGGACTTACAATGCAGCGAATGCGATAAAAAGTTCACAACTAATACAGCTTTGATCTGGCATTATGAAAAGTTGCATTCAGAAAATAAACTGGAAACATCATGCCATGCTTGCGCTAAAGAGTTCTGTGACCAAAACAGTTTAAAACGTCACATGGAAACGGTCCATTCTGAACAAAGTGCTACATGTGATATTTGCTTCAAAACTTATAAGTCTGCTATGAATTTGCAGAGGCACATAAGAATAACTCATGCACCTCCTGAAGCAGCCAAAAAATGTGATATATGCCAAAAGACGTTCAAATGCTCTATGCACTTGAAAATTCATAACAATGTAGTCCATTCCAAGGAGGGTGAATTCGCGTGTGAtatttgcaataaagtttattccTCAAAAAAATACATGCTAAAACACAAAAAGACGCACAATAAAAAGGTTTACCCTTGCACCATGTGTCTTAAACTATTCAAATCGACAAACGATGTTACGAGACACATTAAAAGAGTGCATATGAAGAACGGGGATCAAGTTTTAGACCAAGACGATTCAAGCCAAGAAATTTCAGTTAGCAATGAAGAGACTAGCTGTGTTAAATGCGGCTTAGTATTTACAGATGATGAACAATTGCATGCTCATATAATAAACTGTAGCGTAAAAGAAGGATATACCGATACTATTGTTAACATACAAAATAGTTTTAGCTGTCCCAATTGTGGTCAGTTATTTGGTGATAATATAGAACTACAGTCTCACTTAGCAAGCTGCAGACAAATAAAGATTGAACCAGATGATCAAAGTATTTATAGTCAAAATGAAAACAGTATGGAAGAAAATTCGTGCACCAAATGTGGAGAGATGTTTGACAGTGATGCAGAATTACACTCTCACATTATACATTGTGGGAATGTGGTTAAAAATACAGTAGTTAAAATTGAACTTGaagaattaaataatgatacaaGTTAA
- Protein Sequence
- MDSKPEQIYVKPEINIEVEIQPLNEVATEHTDIKTEPSDVNFEGKAVDNLVIKPELPLQYFNDFQPSQEEESSSTEARPKRSIEIEGKVYENGKINRLQCPQCSNTFKNRANLKSHLKFVHSTENDAVDCDICFRTFKSLLHLYSHKSSVHAGEMQVNCDYCEKTFANKKKLNNHIFYCHPETEEDVNCEVCTKVFKSKYRLKVHMKQVHPEGQTVNCPECHKEFKNSMLLQRHIKWAHPADGLIYRCPQCNRVLPSIDGYRRHMKAVHGAKKVTCEICNKVLKTNGSLNRHMATVHSAVKTERKKYKTGDLQCSECDKKFTTNTALIWHYEKLHSENKLETSCHACAKEFCDQNSLKRHMETVHSEQSATCDICFKTYKSAMNLQRHIRITHAPPEAAKKCDICQKTFKCSMHLKIHNNVVHSKEGEFACDICNKVYSSKKYMLKHKKTHNKKVYPCTMCLKLFKSTNDVTRHIKRVHMKNGDQVLDQDDSSQEISVSNEETSCVKCGLVFTDDEQLHAHIINCSVKEGYTDTIVNIQNSFSCPNCGQLFGDNIELQSHLASCRQIKIEPDDQSIYSQNENSMEENSCTKCGEMFDSDAELHSHIIHCGNVVKNTVVKIELEELNNDTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01282604; iTF_01279506; iTF_01282968;
- 90% Identity
- iTF_01279506;
- 80% Identity
- iTF_01279506;