Ppur059803.1
Basic Information
- Insect
- Pyrausta purpuralis
- Gene Symbol
- -
- Assembly
- GCA_963924145.1
- Location
- OZ001670.1:2942373-2944265[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.9e-05 0.01 18.1 1.1 2 23 99 121 98 121 0.94 2 16 0.02 3.4 10.2 2.0 3 23 130 151 129 151 0.95 3 16 6.9e-05 0.012 17.9 3.2 3 23 159 180 157 180 0.92 4 16 7.2e-05 0.012 17.8 0.5 3 23 189 210 187 210 0.95 5 16 2.2e-06 0.00037 22.6 0.3 3 23 218 239 216 239 0.95 6 16 0.0002 0.034 16.5 0.1 1 23 246 269 246 269 0.96 7 16 4.1e-05 0.007 18.6 0.2 2 23 275 297 274 297 0.96 8 16 1.9e-05 0.0033 19.7 0.9 2 23 313 335 312 335 0.95 9 16 0.00062 0.1 14.9 3.5 2 23 343 365 342 365 0.96 10 16 1.1e-05 0.0018 20.5 0.9 2 23 371 393 371 393 0.97 11 16 0.05 8.5 8.9 5.0 2 23 401 423 400 423 0.94 12 16 3.2e-05 0.0054 19.0 2.1 1 23 429 451 429 451 0.98 13 16 0.00014 0.024 16.9 0.6 1 23 456 479 456 479 0.97 14 16 0.0045 0.77 12.2 0.1 2 22 504 524 503 524 0.93 15 16 0.001 0.17 14.2 0.2 1 21 542 562 542 563 0.94 16 16 0.037 6.3 9.3 0.5 3 20 589 606 588 608 0.93
Sequence Information
- Coding Sequence
- atggaCACTAATCCAGAacaaatttttgtcaaaccagAAATAAACATAGAAGTTGAAATCCAGCCACTCAATGAAGTCACAACTGAACGTATAGATATAAAAACAGAACCATTAGATGTTAATTCTGAAGGCAAAGCGGTAGACAATTTGGTCATCAAACCAGAACTACcattacaatattttgatgacttcCAAAGGTCACAGGAAGAGGAGTCATCATCCACTGAAGTCAGACCAAAAAGATCGATAGAAATTGAAGGAAAAGTGTATAAGAAtggaaaaataaatagattgcAGTGTCCTCAATGTagtaatacatttaaaaatcgaGCAAATCTTAGGTCACACTTAAAATTTGTACATTCCACAGATGATGACGCAGTTGATTGCGATATATGTTACAGAACATTCAAATCACTACTCCATTTGTATTCACATAAGAGTTCTGTGCATGCTGGAGAAATGCAAGTGAATTGTGATTACTGTGACAAAACGTttgcaaataaaaagaaattaaacaaCCACATATTTTACTGCCATCCAGACACAGAGGAAGATGTTAACTGTGAAGTTTGTGCAAAGGTTTTCAAATCTAAGTACCGTTTAAAAGTTCATATGAAGCAGGTGCATCCGGAAGGACAAACTGTTAACTGTCCAGATTGTAATAAAGAATTCAAGAATAGTATGTTACTGCAGCGACACATAAAATGGGCACACCCGACTGATGGATTAATATACCGTTGTCCAGAATGCAACAGGGTTTTACCTTCAATAGATGGATACCGACGTCATATGAAAGCAGTGCATGGCGCCAAAAAGGTTACATGTGAAGTATGCTACAAAGTCCTTAAGACTAATGGCAGTTTGAATCGCCATATGGCAACAGTACACAGTTCAGTCAAAACTGAaagaaaaaagtataaaactgGGGATTTACAATGCAGTGAATGCGataaaaaatttacaacaaatacAGCTTTGCTCTGGCATTATGAAAAGTTTCATTCAGAAAATAAACTGGAAACCTCATGCCATGCTTGCGCTAAAGAGTTCTGTGATCAAAACAGTTTGAAGCGTCACATGGAAACGGTACATTCTGAACAAAGTGCTACGTGTGATATTTGCTTCAAAACGTATAAGTCTGCTATGAATTTGCAGCGGCATATTAAAATAACTCATGCACCTCCAGAAGCTGCAAAGAAATgtgaaatatgccaaaagacgttCAAATGCTCAATGCACTTGAAAATTCATAACAATGTTGTCCATTCCAAAGACGGTGAATACGCTTGTGATATTTGCAATAAAGTCTATTCCTCAAAAAAATACATGCTGAAACACAAAAAGACTCACAATAAAAAGGTTTACCCTTGCACCATGTGTCCTAAACTTTTCAAATCGACAAATGATGTAACGAGACACATCAAAAGAGTGCATATGAAGAACGGAGACCAAATACTAGATCAGGATGATACAAGCCAAGAAAATTCTGTTTACGGTGAAGAGACTAGCTGTGTCAAATGCGGTTTAGTTTTCACTAATGATGAAGAATTGCATTCTCATATAATAACTTGTAGCGTAAAAGAAGAATATCCCGATACTGGTGTTAACATACAACATAGTTTCAGCTGTCCTAATTGTGGTCAGTTGTTCAAGGATAATTTAGAACTACAATCCCATTTGTCAAGCTGCAGCCAAATGAAGATAGAACCGGACAATGGaagtatttatattcataatgataACAGTATGGAAGAAAATGCATGTACCAAATGTGGTGAGATGTTTGATGATGACACAGAACTGCACTCTCACAGAATACATTGTGGGAATGAGGTTAAAAATACTGTTGTTAAAATTGAACTTGAGGAAATAAATGATGATTCATATTGA
- Protein Sequence
- MDTNPEQIFVKPEINIEVEIQPLNEVTTERIDIKTEPLDVNSEGKAVDNLVIKPELPLQYFDDFQRSQEEESSSTEVRPKRSIEIEGKVYKNGKINRLQCPQCSNTFKNRANLRSHLKFVHSTDDDAVDCDICYRTFKSLLHLYSHKSSVHAGEMQVNCDYCDKTFANKKKLNNHIFYCHPDTEEDVNCEVCAKVFKSKYRLKVHMKQVHPEGQTVNCPDCNKEFKNSMLLQRHIKWAHPTDGLIYRCPECNRVLPSIDGYRRHMKAVHGAKKVTCEVCYKVLKTNGSLNRHMATVHSSVKTERKKYKTGDLQCSECDKKFTTNTALLWHYEKFHSENKLETSCHACAKEFCDQNSLKRHMETVHSEQSATCDICFKTYKSAMNLQRHIKITHAPPEAAKKCEICQKTFKCSMHLKIHNNVVHSKDGEYACDICNKVYSSKKYMLKHKKTHNKKVYPCTMCPKLFKSTNDVTRHIKRVHMKNGDQILDQDDTSQENSVYGEETSCVKCGLVFTNDEELHSHIITCSVKEEYPDTGVNIQHSFSCPNCGQLFKDNLELQSHLSSCSQMKIEPDNGSIYIHNDNSMEENACTKCGEMFDDDTELHSHRIHCGNEVKNTVVKIELEEINDDSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01279843;
- 90% Identity
- iTF_01282968;
- 80% Identity
- iTF_01282968;