Plou007117.1
Basic Information
- Insect
- Psyttalia lounsburyi
- Gene Symbol
- lola
- Assembly
- GCA_030522865.1
- Location
- JAPYZN010001985.1:6188-11488[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-16 1.1e-12 48.5 0.0 2 42 374 415 373 418 0.94 2 2 2.2 6.3e+03 -2.0 0.0 30 42 418 431 417 432 0.82
Sequence Information
- Coding Sequence
- ATGTCGATGCAACAATTCTGCCTTCGTTGGAACAATCATCAGCCGAATTTCATATCAGTTTTTTCGACTCTCTTGAGCAATGAGACACTAGTTGATGTGACACTTGCTGCTGAAGGAAGACACTTGCAGGCACACAAAGTCGTTTTATCTGCCTGCAGCACTTACTTTCAGTCACTTTTCACGGTCAATCCCTGCCAACATCCTATTGTTATACTCAAGGATGTGAAGTTCTCAGATCTCAAGATTATGGTGGATTTTATGTATTACGGGGAGGTCAACGTTTCTCAGGATCAGTTGCCATCTATTATTAAGACTGCGGAGAGTTTAAAGATCAAAGGTCTCGCCGAGATGCATACAGCGTCATTAACAAAGTGGCCAAGTGGTAGTTCGGAGCCGAGCGATGGCAACAGGGGTGAATCGTGCTCACCTAGTCCATCGCCAATGTCTCCATCCTACAGGAGAAAGAGGTTGAGAAAGACGTCAACTGGATCGACGTCTGGATCTGGGGATAAGCCGGAGGAAGTCAATGAGATAACTCTCGTTGCGACGAACATTGTCAAACCAGAGCCTCTTATTATGACACAGGAGAGTGGAGAGAATTTAAGGCGTCCTATTAATACCAGCACTGAGTCACAGGGGAGTATCGACGAGGATCAAATATCGATTATGAGCAACATGGAGAGCAGTGCAGCAACAACTCCAGCCCAAAGTGAGGGTTCAATGCAGGACGTGAGTCAGCAATCAGGTACAAACGTTGGACAGAGTTCATTATCATCAGGCCAGACTTCAGCACATCAAGGATTGCAATGGACAATCATGGAGCACACGTATCCACGTTTCGCTCTATCCTCGTGTCAAACGAATCTGTCGATTCAAGCATCATCAGCATTCACAACCCCCGAAATAACGGCCTCATCGAGCATCAATGATCAGTATCCTGGTACAAATACCCCAGGTTCGAGTTGTGCATTAACGAATTACACGAGTCCAACGCATGGAGGACTGCAGCCATCGTCAGGTGGTCCATCGCCATCTGGACAGTGTCCAAATACCTGTCAGAGTCCCTGTGCAAGTCCCCAGGCGACAGTCAAGAGAAAGAGATCGACAAATCCTCAGGCAGACGAGAATTTTATAAGGGCCTTGGATGCCGTACGTTATGGGGGAATTGGGTTCTGCAAGGCCGCCAGAATGTTTGGAGTCAATAATCGAACGCTCTGGCTTGAGTACAAGAAAAGGGGCTATCCTAATAATCGTCCGAGTCTTAAATCCAGAGTTAAACAAGAGGCGCCCACTTCACCACCACCTGCACCAACTTCACAGCCTGTCAACTCTCAGAGTCCGACACCCATGGGTCCTCCCACCACTCCTCATAGCACTCATAATACTCTTAATACACATACCATGCTCACTGCGCACAGCCCACACATGCTCAGCAGCTATGTAGATACCAGGCACAATGATTATTCGTTACCCAATACCAATATGCCGATTAATTTGCATGGGGTCAATTACAATGCCATGTGA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSTLLSNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNVSQDQLPSIIKTAESLKIKGLAEMHTASLTKWPSGSSEPSDGNRGESCSPSPSPMSPSYRRKRLRKTSTGSTSGSGDKPEEVNEITLVATNIVKPEPLIMTQESGENLRRPINTSTESQGSIDEDQISIMSNMESSAATTPAQSEGSMQDVSQQSGTNVGQSSLSSGQTSAHQGLQWTIMEHTYPRFALSSCQTNLSIQASSAFTTPEITASSSINDQYPGTNTPGSSCALTNYTSPTHGGLQPSSGGPSPSGQCPNTCQSPCASPQATVKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEAPTSPPPAPTSQPVNSQSPTPMGPPTTPHSTHNTLNTHTMLTAHSPHMLSSYVDTRHNDYSLPNTNMPINLHGVNYNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00438673;
- 90% Identity
- iTF_01273015; iTF_01273880; iTF_01273184; iTF_00438673; iTF_00438849; iTF_00351221; iTF_00350922; iTF_00048064; iTF_00047885;
- 80% Identity
- iTF_01273880;