Pcon008037.1
Basic Information
- Insect
- Psyttalia concolor
- Gene Symbol
- lola
- Assembly
- GCA_030522845.1
- Location
- JAPYZM010002568.1:4819-9818[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-16 1.1e-12 48.5 0.0 2 42 374 415 373 418 0.94 2 2 2.8 6.6e+03 -2.0 0.0 30 42 418 431 417 432 0.82
Sequence Information
- Coding Sequence
- ATGTCGATGCAACAATTCTGCCTTCGTTGGAACAATCATCAGCCGAATTTCATATCAGTTTTTTCGACTCTCTTGAGCAATGAGACACTAGTTGATGTGACACTTGCTGCTGAAGGAAGACACTTGCAGGCACACAAAGTCGTTTTATCTGCCTGCAGCACTTACTTTCAGTCACTTTTCACGGTCAATCCCTGTCAACATCCTATTGTTATACTCAAGGATGTGAAGTTCTCAGATCTCAAGATTATGGTGGATTTTATGTATTACGGGGAGGTCAACGTTTCTCAGGATCAGTTGCCATCTATTATTAAGACTGCGGAGAGTTTAAAGATCAAAGGTCTCGCCGAGATGCATACAGCGTCATTAACAAAGTGGCCAAGTGGTAGTTCGGAGCCGAGCGATGGCAATAGGGGTGAATCGTGCTCACCTAGTCCATCGCCCATGTCTCCATCCTACAGGAGAAAGAGGTTGAGAAAGACATCAACTGGATCGACGTCTGGATCTGGGGATAAGCCGGAGGAAGTCAATGAGATAACTCTCGTTGCGACGAACATTGTCAAACCAGAGCCTCTTATTATGACACAGGAGAGTGGAGAGAATTTAAGGCGTCCTATTAATACCAACACTGAGTCACAGGGGAGTATCGACGAGGATCAAATATCGATTaTGAGCAATATGGAGAGCAGTGCAGCAACAACTCCAGCCCAAAGTGAGGGTTCAATGCAGGACGTGAGTCAGCAATCAGGTACAAACGTTGGACAGAGTTCATTATCATCAGGCCAGACATCAGCACATCAAGGATTGCAATGGACAATCATGGAGCACACGTATCCACGTTTCGCTCTATCCTCGTGTCAAACGAATCTGTCGATTCAAGCATCATCAGCATTCACAACCCCCGAAATAACGGCCTCATCGAGCATCAATGATCAGTATCCTGGTACAAATACCCCAGGCTCGAGTTGTGCATTAACGAATTACACGAGTCCAACGCATGGAGGACTGCAGCCATCGTCAGGTGGTCCATCGCCATCTGGACAGTGTCCAAATACCTGTCAGAGTCCCTGTGCAAGCCCCCAGGCGACAGTCAAGAGAAAGAGATCGACAAATCCTCAGGCAGACGAGAATTTTATAAGGGCCTTGGATGCCGTACGTTACGGGGGAATTGGGTTCTGCAAGGCCGCCAGAATGTTTGGAGTCAATAATCGAACGCTCTGGCTTGAGTACAAGAAAAGGGGCTATCCTAATAATCGTCCGAGCCTCAAATCCAGAGTTAAACAAGAGGCGCCCACTTCACCACCACCTGCACCAACTTCACAGCCTGTCAACTCTCAGAGTCCGACACCCATGGGTCCTCCCACCACTCCTCATAGCACTCATAATACACTTAATACACATACCATGCTCACTGCGCACAGCCCACACATGCTCAGCAGCTATGTAGATACCAGGCACAATGATTATTCGTTACCCAATACCAATATGCCGATTAATTTGCATGGGGTCAATTACAATGCCATGTGA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSTLLSNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNVSQDQLPSIIKTAESLKIKGLAEMHTASLTKWPSGSSEPSDGNRGESCSPSPSPMSPSYRRKRLRKTSTGSTSGSGDKPEEVNEITLVATNIVKPEPLIMTQESGENLRRPINTNTESQGSIDEDQISIMSNMESSAATTPAQSEGSMQDVSQQSGTNVGQSSLSSGQTSAHQGLQWTIMEHTYPRFALSSCQTNLSIQASSAFTTPEITASSSINDQYPGTNTPGSSCALTNYTSPTHGGLQPSSGGPSPSGQCPNTCQSPCASPQATVKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEAPTSPPPAPTSQPVNSQSPTPMGPPTTPHSTHNTLNTHTMLTAHSPHMLSSYVDTRHNDYSLPNTNMPINLHGVNYNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00438673;
- 90% Identity
- iTF_01273702;
- 80% Identity
- iTF_01273184;