Ppal012253.1
Basic Information
- Insect
- Pseudomyrmex pallidus
- Gene Symbol
- -
- Assembly
- GCA_014825455.1
- Location
- QVNV01019800.1:7741-12329[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.1 5.9e+02 1.5 0.1 2 17 64 79 63 80 0.87 2 19 0.78 76 4.3 4.3 2 23 279 301 278 301 0.97 3 19 0.8 78 4.3 2.1 1 23 352 374 352 374 0.91 4 19 0.24 23 6.0 1.6 1 23 423 445 423 445 0.98 5 19 0.0093 0.9 10.4 0.4 1 20 492 511 492 513 0.93 6 19 0.019 1.8 9.4 3.9 1 23 553 575 553 575 0.98 7 19 2.6e-05 0.0025 18.4 0.9 1 23 606 628 606 628 0.98 8 19 0.0011 0.1 13.4 0.3 1 23 634 656 634 656 0.97 9 19 0.0025 0.24 12.2 2.5 1 23 700 723 700 723 0.96 10 19 0.039 3.8 8.4 0.9 1 23 729 752 729 752 0.94 11 19 9.7e-06 0.00094 19.8 0.6 2 23 760 782 759 782 0.97 12 19 0.00024 0.023 15.4 0.0 1 23 790 812 790 812 0.92 13 19 0.23 22 6.0 0.1 1 20 865 884 865 884 0.96 14 19 0.0026 0.25 12.1 0.1 2 23 904 925 903 925 0.96 15 19 8.2e-05 0.008 16.9 3.0 1 23 938 960 938 960 0.98 16 19 2e-05 0.0019 18.8 3.2 1 23 982 1005 982 1005 0.96 17 19 0.025 2.5 9.0 2.7 1 23 1067 1090 1067 1090 0.96 18 19 0.00055 0.053 14.3 1.4 1 23 1112 1135 1112 1135 0.93 19 19 0.0028 0.27 12.1 1.1 2 23 1224 1246 1223 1246 0.95
Sequence Information
- Coding Sequence
- ATGAACGAGGACGTTGTGGAAATTGAAAATGTGGAGAATGTCTGCAGACTCTGTCTCTCGACGGACGAGCCGAGGTCCTCGGTGTTCGCGGCGCAGGAAGAGGAAGATGATTCCGACGTGTTAATGGTTGACAAGATCGAGGAATGTTTGTCGATACAGATTTTAGCTACTGATAAACTATCCACATTGATATGTACAAACTGTGTAAAAAGTGTCAATCAGTGGCACACTTATAAAGAGTCATGCCTGCGTTCTCAGAACAAGTTGCAAGAATGGTTGGCAAAGCAGCAATCAAATCCTATGGTTATAACAATCAAGGATGAACCAATGGACATTGATAACGATCAGAATATAGAAATTATCTCAGAGGTTATCAACAACCCAGAACAAACGCAATCACCAACACATGTTCAGATGATAGAAGATGATGATAAAGAAACGGATAATAAGGAAGTGCAGAAAGTAGCAGATGACACAAATAATGACAGCAAACAGGAAGATACTGTGGATGGAACTGTTTCAGTACGCGAGTCAGTTGATGAAACAGTTCCATCTACAGTTGAGGAGACTGACAAGGATGAAAGTAAAGCAGACTCGAAGGATTCTGTAGCTTTGTGTTCTATTAAAACTGAGCCGCCGGATGACGATGACGCGGATTGTATAGACTTAGACTCTCTGAATGACAGAGATTTGCTGACTTCTTTGGCCTCAAAAGACGACACAGTTATGGAAGCAGATTCCACGCAAAAATCCAATGCTGCCCGCATATTGCCTAAAAAGAAGATGCGACGTGGCCCACATACTCATTACAGAGGTATGCGTACCTTTAAACAGAAATGCCCATTCTGTAAGATCTTCTTGCATTCTAAACAAACATACGTAAACCACATGAAGAAATTTCACTCTGAAAGAAATGATATCTCAAATTCAAACTCAGTATCGCAGAACGAGGAGGAGGAGATGGTAGAAGATCTGGAAGACGAACTGGCCAGCATGGAGCAGGAATCGCCATTGACGCCCGTTCAACAGGAGATAATCAGTCAATTGAAAACGTTCTCCTGCTACAGCTGCGATCAGACGTTCAACGATCGGCGCAGCACGCTTTTCCACATACGCCTGCACCTGCCAGACTTGAGACCGCACACGTGCATTGCTTGTTTGACTGAATTTCCCGATCGTTCACTATATCAATCGCATTGCGGCGCGTCTTTCGAATGCGCCATGAAGATTGCCCTGGTCGTGCCGACGCGTGGTCACGAGCGATATTTCACGTGTAACATGTGTCTGCGCTCGATGCAGAGCAGGAAAGAACTGCTCAGTCACTTGTCGAAACATTCCGACAAGCAATACGAGGAAATGATGTCGCCAACGCGATCGCCGCCCAAACTGAAGCCAATGGCACCGTTGCCGAAAAGCAGTTCCGACAAGCCGCAGAAATCCGGGCCTTACAAGAACGGCGATCCGGCGCACAATCACATTTGCGATCTCTGCGGCATGATTTACAGATACCGACCCAATTTGTTCAAGCATAAAGAATACTGTAAACTATTAGACCCGGAAACCAGAATGACATACAAGTGCGTACACTGCCTTATGACTTTCCTTGTGTTTAAAAAATTCCATTCTCACATCACGGTCGATCACAAGAAGAAGGAGTTCACGTGCTTCGTATGTAGCTCCAAATTCCGATCGCCCAGCGATTTCCTCACCCATCACGAGAAACATCGCGGCACGAAGAAGCACGACGGCGCTTCGCAGAGCACGGGTCAGTTCCCGTTGAAGGAACGAAACGCTCACGAAGCGGATCCTCAGAGCTATACTTGCGCTCTTTGCAATCAGGAGTTCTCCACGAGATCCGAACTGTCCAAGCACCGAAGTATTCATCTCAAAGTGAAAATCTATTCCTGCGTCATATGTCACAGCATGTTCAGCAGCATCGGCGCTTTGGAAATCCACATGAAGGATCATGGCATTGACGATCCGGACGAACGGAATGCCAACATTTCCTGTGTGGAATATGGCAACTTGGACGAGGACATGAGGATCGAGAAGGACGTGGCGAACACCAGTAGTGTTTCGGATCCTGGCACGCAAGTCCACAAGTGCTGCGAATGTGGCAAGATTATGAACACCTACGCCAATCTCCGTAGACACGCCAAAATCGCACATCGAAACGCCACAATCTTCGAATGCATCGACTGTTCGCGAATGTTCACGCGTAAGGAGGTGTATGATCAGCATATGCAGTTGAAACACAAGAATACCAAGACAATGCTTCAGTGTCCCCAATGTCCTAAGAGTTTCGTCTTCCAGTCGAATTTCGCCTATCACTTCCGCACCGCTCATCTCGAGAAATCAGAAAACGGTTACGCTTGCAATATCTGCGGTAAAGTTTTCGAAGAGGAAGCGTCTTTGAAGATACACAAGGGTTGGCACAATCGCGCCAATTCTCGCCTGAGCACTCAGCATATATTGAGCAATCCGAACTCTTCGAAAGATTCCGGGGAATCAAGCGACAACGCGGAACGACCAGCGAGAGCCCGAAAGTCATTCCCGAATCCTCCGCTCCAGTCACCAACAAAATCGTCTAATTTCGAATGTCAGGTATGCAACGACCAATTCAACAACGTTGCGGAACTGAGATCGCATCTGTGGGAGGTTCATTGTGCTCGTAACAAGACGGAAAAAAGCTTCACCAACAACGAGCTTCAGTGCGAGCTTTGCACCAATATTTTCCCCGATCGGGAAACTCTGGCGTCCCACATGCAGTGGCACAAAGCCAATCCCATTCTCAGCGAGGTGGGAAAGACATTCACTTGCGACGTGTGCGGAAAACACTACAGTTCGAAGAAAGTCTTGTGGAAGCACAAAAGACTTCACAAAGCTACCGTCGTGGCCTCGATAAAGTTCCAGTCTTTGGCTAGGAAACCGATGGCCAGCCAGTTTATGTGCACGTATTGTCGAAAGGTCTTCTCGAGCAGTCAGTCTTTGCAACGACACAAGCTTAGCTTCCACGCGCACGAGTCGCACAATCAGCAACGCGTGCAGCAACCGATGCATAACAAAGGTCGTAAGATCTCGCTCAACTCGGAGGATGAGCCGGGAGCAAAGATTCCGAGATTGGATATGGACAGTGAAAATCCTCCGACCAGACTACCGTCATTCTCCACGGACTTCGTTGGCGAAAAGAAGAAGTCCTTCATGTGTCATTTGTGCAAGAAGCTATTCCCCAACATGAGCGTGCTCTACAAACACAAACAATCGGTACACAAGCCGCGAGCGTCGAAGGATCATTTGCTTGAATTCATACCAACTACGACCAAGGACGGCAAGTACTCGTGCAATGTCTGCTACAAGAAATTCCCCGGTTTGTCGAATTTACGACAACACTTTACGATTAAGCACAAAAAGATGTCGTCTCTCGTAGCGTCTGATAAGTTGAGAAATCACGAGCTGACGTCCAACAATGTCACGCACAAGACTTACGAATCAACTCACAATTACATGATATACAGCTGCAAGCTGTGCAAGCAGTGCCACGTCTTCAACAGAGATTCCATTGTAAGCCATATCAACAACGTGCACAACGCGGTTTACGAGGCCGACAGCAAGATGTTCCACCGGGAAACTAATCTGAACACCTACGTGGTGAAAGGCGCGATCGGGTCCACCTGTCCCCATTGCACCGTCAAATATCCGAACAACAAGGCTTTGAAGATACATTACATTAGGTATCACGAGGACGCCGATTGA
- Protein Sequence
- MNEDVVEIENVENVCRLCLSTDEPRSSVFAAQEEEDDSDVLMVDKIEECLSIQILATDKLSTLICTNCVKSVNQWHTYKESCLRSQNKLQEWLAKQQSNPMVITIKDEPMDIDNDQNIEIISEVINNPEQTQSPTHVQMIEDDDKETDNKEVQKVADDTNNDSKQEDTVDGTVSVRESVDETVPSTVEETDKDESKADSKDSVALCSIKTEPPDDDDADCIDLDSLNDRDLLTSLASKDDTVMEADSTQKSNAARILPKKKMRRGPHTHYRGMRTFKQKCPFCKIFLHSKQTYVNHMKKFHSERNDISNSNSVSQNEEEEMVEDLEDELASMEQESPLTPVQQEIISQLKTFSCYSCDQTFNDRRSTLFHIRLHLPDLRPHTCIACLTEFPDRSLYQSHCGASFECAMKIALVVPTRGHERYFTCNMCLRSMQSRKELLSHLSKHSDKQYEEMMSPTRSPPKLKPMAPLPKSSSDKPQKSGPYKNGDPAHNHICDLCGMIYRYRPNLFKHKEYCKLLDPETRMTYKCVHCLMTFLVFKKFHSHITVDHKKKEFTCFVCSSKFRSPSDFLTHHEKHRGTKKHDGASQSTGQFPLKERNAHEADPQSYTCALCNQEFSTRSELSKHRSIHLKVKIYSCVICHSMFSSIGALEIHMKDHGIDDPDERNANISCVEYGNLDEDMRIEKDVANTSSVSDPGTQVHKCCECGKIMNTYANLRRHAKIAHRNATIFECIDCSRMFTRKEVYDQHMQLKHKNTKTMLQCPQCPKSFVFQSNFAYHFRTAHLEKSENGYACNICGKVFEEEASLKIHKGWHNRANSRLSTQHILSNPNSSKDSGESSDNAERPARARKSFPNPPLQSPTKSSNFECQVCNDQFNNVAELRSHLWEVHCARNKTEKSFTNNELQCELCTNIFPDRETLASHMQWHKANPILSEVGKTFTCDVCGKHYSSKKVLWKHKRLHKATVVASIKFQSLARKPMASQFMCTYCRKVFSSSQSLQRHKLSFHAHESHNQQRVQQPMHNKGRKISLNSEDEPGAKIPRLDMDSENPPTRLPSFSTDFVGEKKKSFMCHLCKKLFPNMSVLYKHKQSVHKPRASKDHLLEFIPTTTKDGKYSCNVCYKKFPGLSNLRQHFTIKHKKMSSLVASDKLRNHELTSNNVTHKTYESTHNYMIYSCKLCKQCHVFNRDSIVSHINNVHNAVYEADSKMFHRETNLNTYVVKGAIGSTCPHCTVKYPNNKALKIHYIRYHEDAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01268490; iTF_01269997; iTF_01267048; iTF_01270701; iTF_01267762; iTF_01269252;
- 90% Identity
- iTF_01267762;
- 80% Identity
- -