Pfla000775.1
Basic Information
- Insect
- Pseudomyrmex flavicornis
- Gene Symbol
- -
- Assembly
- GCA_014825475.1
- Location
- QVNW01002647.1:42150-46751[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6 6.4e+02 1.5 0.1 2 17 64 79 63 80 0.87 2 19 0.77 82 4.3 4.3 2 23 281 303 280 303 0.97 3 19 1.9 2.1e+02 3.1 2.9 1 23 354 376 354 376 0.91 4 19 0.23 25 6.0 1.6 1 23 425 447 425 447 0.98 5 19 0.016 1.7 9.6 0.4 1 20 496 515 496 517 0.93 6 19 0.0071 0.76 10.7 3.9 1 23 557 579 557 579 0.98 7 19 2.6e-05 0.0027 18.4 0.9 1 23 610 632 610 632 0.98 8 19 0.001 0.11 13.4 0.3 1 23 638 660 638 660 0.97 9 19 0.0024 0.26 12.2 2.5 1 23 704 727 704 727 0.96 10 19 0.039 4.1 8.4 0.9 1 23 733 756 733 756 0.94 11 19 9.5e-06 0.001 19.8 0.6 2 23 764 786 763 786 0.97 12 19 0.00023 0.025 15.4 0.0 1 23 794 816 794 816 0.92 13 19 0.22 24 6.0 0.1 1 20 869 888 869 888 0.96 14 19 0.0026 0.27 12.1 0.1 2 23 908 929 907 929 0.96 15 19 8.1e-05 0.0086 16.9 3.0 1 23 942 964 942 964 0.98 16 19 2e-05 0.0021 18.8 3.2 1 23 986 1009 986 1009 0.96 17 19 0.025 2.7 9.0 2.7 1 23 1071 1094 1071 1094 0.96 18 19 0.00054 0.058 14.3 1.4 1 23 1116 1139 1116 1139 0.93 19 19 0.001 0.11 13.4 1.0 2 23 1228 1250 1227 1250 0.95
Sequence Information
- Coding Sequence
- ATGAACGAGGACGTTGTTGAAATTGAAAGTGTGGAGAATGTCTGCAGACTCTGTCTCTCCACGGACGAGCCGAGGTCTTCGGTGTTCGCGGCACAGGAGGAGGAAGATGATTCCGACGCGTTACTGGTCGACAAGATCGAGGAATGTTTGTCGATACAGATTTTAGCTACTGATAAAGTATCCACATTGATATGTACAAATTGTGTAAAAAGTGTCAATCAGTGGCACACTTATAAAGAGTCATGCCTGCGTTCTCAGAACAAGTTGCAAGAATGGTTGGCAAAGCAGCAATCAAATCCTATGGTTATAACAATCAAAGACGAACCAATGGACATTGATAACGATCAGAATATAGAAATTATCTCAGAGGTTATCAACAACTCAGAACAAATGCAATCACCAACAGATGTTCAGATGGTAGAAGATGATGATAAAGAAATGGATAATAAGGAAGTGCAGGAAGTAGCAGATGACAGTGACACAAATAATGACAGCAAACAGGAAGATACTGTGGATGGGACTGTTTTAGTACGCGAGTCAGTTGATGAAACAGTTCCATCCACAGTTGAGGATACTGACAAGGATGAAAGTAAAGCGGACCCGAAGGATTCTGTAGCTTTGTGTTCTATTAAAACCGAGCCGCCGGACGACGATGACGCGGATTGTATAGACTTAGACTCTCTGAATGACAGAGAGTTGCTGACTTCTTTGGCCTCAAAAGACGACACAGTTATGGAAGCAGATTCCACGCAAAAATCCAATGCTGCCCGCATATCGCCTAAAAAGAAGACACGACGTGGCCCACATACTCATTACAGAGGTATGCGTACCTTTAAACAGAAATGCCCATTCTGTAAGATCTTCTTGCATTCTAAACAAACATACGTAAACCACATGAAGAAATTTCACTCTGAAAGAAATGATATCTCGAATTCAAACTCAGTATCGCAGAACGAGGAGGAGGAGATGGTAGAAGATCTGGAAGACGAACTGGCCAGCATGGAGCAGGAATCGCCATTGACGCCCGTTCAACAGGAGATAATCAGTCAATTGAAAACGTTCTCCTGCTACAGCTGCAATCAGACGTTCAACGATCGGCGCAGCACGCTTTTCCACATACGCCAGCACCTGCCAGACTTGAGACCGCACACGTGCATTGCCTGTTTGACTGAATTTCCCGATCGTTCATTATATCAGTCGCATTGCGGCGCGTCTTTCGAATGCGCCATGAAGATTGCCCTGGTCGTGCCGACGCGTGGTCACGAGCGATATTTCACGTGTAACATGTGTCTGCGCTCGATGCAGAGCAGGAAAGAACTGCTCAGTCACTTGTCGAAACATTCCGACAAGCAATACGAGGAAATGATGTCGCCAACGCGATCACCGCCCAAATTGAAGCCAATGGCACCGTTGCCATCCGCGAAAAGCAGTTCCGACAAGCCGCAGAAATCCGGGCCTTACAAGAACGGCGATCCGGCGCACAATCACATTTGCGATCTCTGCGGCATGATTTACAGATACCGACCCAATTTGTACAAGCATAAAGAATACTGTAAACTATTAGACCCGGAAACCCGAATGACATACAAGTGCGTACACTGCCTTATGACTTTCCTTGTGTTTAAAAAATTCCATTCTCACATCACGGTCGATCACAAGAAGAAGGAGTTCACGTGCTTCGTGTGTAACTCCAAATTCCGATCGCCCAGCGATTTCCTCACCCATCACGAGAAACATCGCGGCACGAGGAAGCACGACGGCGCTTCGCAGAGCACGGGTCAGTTCCCGTTGAAAGAACGAAACGCTCACGAAGCGGATCCTCAGAACTATACTTGCGCTCTTTGCAATCAGGAGTTCTCCACGAGATCCGAACTGTCCAAGCACCGAAGTATTCATCTCAAAGTGAAAATCTATTCCTGCGTTATATGTCACAGCATGTTCAGCAGCATTGGCGCTTTGGAAATCCACATGAAGGATCATGGCATTGACGATCCGGACGAACGGAATGCCAACATTTCCTGTGTGGAATATGGCAACTTGGACGAAGACATGAGGATTGAGAAGGACATGGCGAACACCAGTAGTGTTTCGGATCCTAGCACGCAAGTCCACAAATGCTGCGAGTGTGGCAAGATCATGAACACCTATGCCAATCTCCGTAGACACGCCAAAATCGCTCATCGAAACGCCACGATCTTCGAATGCATCGACTGTTCGCGAATGTTCACGCGTAAGGAGGTGTACGATCAGCATATGCAATTGAAACACAAGAATACCAAGACAATGCTTCAGTGTCCCCAATGTCCTAAGAGTTTCGTCTTCCAGTCGAATTTCGCCTATCACTTCCGCACCGCTCATCTCGAGAAATCAGAAAACGGTTACGCTTGCAATATCTGCGGCAAAGTTTTCGAAGAGGAAGCGTCCCTGAAGATACACAAGGGTTGGCACAATCGCGCCAATTCTCGTCTGAGCACTCAGCATATACTGAGCAATCCGAACTCTTCGAAAGATTCCGGCGAATCGAGCGACAACGCTGAACGTCCGGCGAGAGCCCGAAAGTCCTTCCCCAATCCTCCGCTCCAGTCACTAACAAAAACGTCTAATTTCGAATGTCAGGTATGCAACGACCAATTCAACAACGTTGCGGAACTGAGATCGCATCTGTGGGAGGTTCATTGTGCTCGTAGCAAGACGGAAAAAAGCTTCACCAACAACGAGCTTCAGTGTGAGCTTTGCACCAACATTTTCCCCGATCGGGAAACCCTGGCGTCCCACATGCAGTGGCACAAAGCCAATCCCATTCTCAGCGAGGTGGGAAAGACATTCACTTGCGACGTGTGCGGCAAACACTACAGTTCGAAGAAAGTCTTGTGGAAGCACAAAAGACTTCACAAAGCTACCGTTGTGGCCTCGATGAAGTTCCAGTCTTTGGCTAGGAAACCAATGGCCAGCCAGTTTATGTGCACGTATTGTCGAAAGGTCTTCTCGAGCAGTCAGTCTTTGCAACGACACAAGCTTAGCTTCCACGCGCACGAGTCGCACAATCAGCAACGCGTGCAGCAACCGGTGCATAATAAAGGTCGTAAGATCTCGTTCAACTCGGAAGATGAGCCGGGAGCAAAGATTCCGAGATTGGATACCGACAGTGAAAACCCCTCGACCAGACTACCGTCATTCTCCACGGACTTTGTTGGCGAGAAGAAGAAGTCCTTTATGTGTCATTTATGCAAGAAGCTATTCCCCAACATGAGCGTGCTGTACAAACACAAACAATCGGTACACAAGCCGCGAGCGTCGAAGGACCACTTGCCTGAATTCATACCAACCACGACCAAGGACGGCAAGTACTCGTGCAATGTCTGCTACAAGAAATTCCCCGGTCTGTCGAATTTACGACAACACTTTACGATCAAGCACAAAAAGATTTCGTCTCTCGTAGTGTCTGATAAGCCGAGAAATCACGAGCTTACCTCCAACAATGTCACGCACAAGACTTACGAATCAACTCACAATTACATGATATACAGCTGCAAGCTGTGCAAGCAGTGCCACGTCTTCAACAGAGATTCCATTGTAAGCCATATCAACAACGTGCACAACGCGGTGTACGAGGCCGACAGCAAGATGTTCCACCGGGAAACTAATCTGAACACCTACGTGGTGAAGGGCGCGATCGGATCCACCTGTCCCCATTGCAACGTCAAATACCCGAACAACAAGGCTTTGAAGATACATTACATTAGGTATCACGAGGACGCCGATTGA
- Protein Sequence
- MNEDVVEIESVENVCRLCLSTDEPRSSVFAAQEEEDDSDALLVDKIEECLSIQILATDKVSTLICTNCVKSVNQWHTYKESCLRSQNKLQEWLAKQQSNPMVITIKDEPMDIDNDQNIEIISEVINNSEQMQSPTDVQMVEDDDKEMDNKEVQEVADDSDTNNDSKQEDTVDGTVLVRESVDETVPSTVEDTDKDESKADPKDSVALCSIKTEPPDDDDADCIDLDSLNDRELLTSLASKDDTVMEADSTQKSNAARISPKKKTRRGPHTHYRGMRTFKQKCPFCKIFLHSKQTYVNHMKKFHSERNDISNSNSVSQNEEEEMVEDLEDELASMEQESPLTPVQQEIISQLKTFSCYSCNQTFNDRRSTLFHIRQHLPDLRPHTCIACLTEFPDRSLYQSHCGASFECAMKIALVVPTRGHERYFTCNMCLRSMQSRKELLSHLSKHSDKQYEEMMSPTRSPPKLKPMAPLPSAKSSSDKPQKSGPYKNGDPAHNHICDLCGMIYRYRPNLYKHKEYCKLLDPETRMTYKCVHCLMTFLVFKKFHSHITVDHKKKEFTCFVCNSKFRSPSDFLTHHEKHRGTRKHDGASQSTGQFPLKERNAHEADPQNYTCALCNQEFSTRSELSKHRSIHLKVKIYSCVICHSMFSSIGALEIHMKDHGIDDPDERNANISCVEYGNLDEDMRIEKDMANTSSVSDPSTQVHKCCECGKIMNTYANLRRHAKIAHRNATIFECIDCSRMFTRKEVYDQHMQLKHKNTKTMLQCPQCPKSFVFQSNFAYHFRTAHLEKSENGYACNICGKVFEEEASLKIHKGWHNRANSRLSTQHILSNPNSSKDSGESSDNAERPARARKSFPNPPLQSLTKTSNFECQVCNDQFNNVAELRSHLWEVHCARSKTEKSFTNNELQCELCTNIFPDRETLASHMQWHKANPILSEVGKTFTCDVCGKHYSSKKVLWKHKRLHKATVVASMKFQSLARKPMASQFMCTYCRKVFSSSQSLQRHKLSFHAHESHNQQRVQQPVHNKGRKISFNSEDEPGAKIPRLDTDSENPSTRLPSFSTDFVGEKKKSFMCHLCKKLFPNMSVLYKHKQSVHKPRASKDHLPEFIPTTTKDGKYSCNVCYKKFPGLSNLRQHFTIKHKKISSLVVSDKPRNHELTSNNVTHKTYESTHNYMIYSCKLCKQCHVFNRDSIVSHINNVHNAVYEADSKMFHRETNLNTYVVKGAIGSTCPHCNVKYPNNKALKIHYIRYHEDAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01271431;
- 90% Identity
- iTF_01267762;
- 80% Identity
- -