Basic Information

Insect: Pseudomyrmex elongatus
Gene Symbol: -
Assembly: GCA_014825605.1
Location: QVNY01019182.1:9462-14064[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 6.7 1.4e+03 1.5 0.1 2 17 64 79 63 80 0.87

2 19 0.85 1.7e+02 4.3 4.3 2 23 281 303 280 303 0.97

3 19 2.1 4.4e+02 3.1 2.9 1 23 354 376 354 376 0.91

4 19 0.26 53 6.0 1.6 1 23 425 447 425 447 0.98

5 19 0.01 2.1 10.4 0.4 1 20 496 515 496 517 0.93

6 19 0.0079 1.6 10.7 3.9 1 23 557 579 557 579 0.98

7 19 2.8e-05 0.0058 18.4 0.9 1 23 608 630 608 630 0.98

8 19 0.0012 0.24 13.4 0.3 1 23 636 658 636 658 0.97

9 19 0.0027 0.55 12.2 2.5 1 23 702 725 702 725 0.96

10 19 0.043 8.7 8.4 0.9 1 23 731 754 731 754 0.94

11 19 1.1e-05 0.0022 19.8 0.6 2 23 762 784 761 784 0.97

12 19 0.00026 0.053 15.4 0.0 1 23 792 814 792 814 0.92

13 19 0.25 51 6.0 0.1 1 20 867 886 867 886 0.96

14 19 0.0029 0.58 12.1 0.1 2 23 906 927 905 927 0.96

15 19 9e-05 0.018 16.9 3.0 1 23 940 962 940 962 0.98

16 19 2.2e-05 0.0045 18.8 3.2 1 23 984 1007 984 1007 0.96

17 19 0.028 5.7 9.0 2.7 1 23 1069 1092 1069 1092 0.96

18 19 0.0013 0.27 13.2 1.3 1 23 1114 1137 1114 1137 0.93

19 19 0.0012 0.24 13.4 1.0 2 23 1226 1248 1225 1248 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	6.7	1.4e+03	1.5	0.1	2	17	64	79	63	80	0.87
2	19	0.85	1.7e+02	4.3	4.3	2	23	281	303	280	303	0.97
3	19	2.1	4.4e+02	3.1	2.9	1	23	354	376	354	376	0.91
4	19	0.26	53	6.0	1.6	1	23	425	447	425	447	0.98
5	19	0.01	2.1	10.4	0.4	1	20	496	515	496	517	0.93
6	19	0.0079	1.6	10.7	3.9	1	23	557	579	557	579	0.98
7	19	2.8e-05	0.0058	18.4	0.9	1	23	608	630	608	630	0.98
8	19	0.0012	0.24	13.4	0.3	1	23	636	658	636	658	0.97
9	19	0.0027	0.55	12.2	2.5	1	23	702	725	702	725	0.96
10	19	0.043	8.7	8.4	0.9	1	23	731	754	731	754	0.94
11	19	1.1e-05	0.0022	19.8	0.6	2	23	762	784	761	784	0.97
12	19	0.00026	0.053	15.4	0.0	1	23	792	814	792	814	0.92
13	19	0.25	51	6.0	0.1	1	20	867	886	867	886	0.96
14	19	0.0029	0.58	12.1	0.1	2	23	906	927	905	927	0.96
15	19	9e-05	0.018	16.9	3.0	1	23	940	962	940	962	0.98
16	19	2.2e-05	0.0045	18.8	3.2	1	23	984	1007	984	1007	0.96
17	19	0.028	5.7	9.0	2.7	1	23	1069	1092	1069	1092	0.96
18	19	0.0013	0.27	13.2	1.3	1	23	1114	1137	1114	1137	0.93
19	19	0.0012	0.24	13.4	1.0	2	23	1226	1248	1225	1248	0.95

Sequence Information

Coding Sequence: ATGAACGAGGACGTTGTGGAAATTGAAAATGTGGAGAATGTCTGCAGACTATGTCTCTCCACGGACGAGCCGAGATCCTCGGTGTTCGCGGCACAGGATGAGGAAGATGATTCCGACGTGTTCCTGGTCGACAAGATCGAGGAATGTTTGTCGATACAGATTTTAGCTACTGATAAAGTATCCACATTGATATGTACAAATTGTGTAAAAAGTGTCAATCAGTGGCACACTTATAAAGAGTCATGCCTGCGTTCTCAGAACAAGTTGCAAGAATGGTTGGCAAAGCAGCAATCAAATCCTATGGTTATAACAATCAAGGATGAACCAATGGACATTGATAACGATCAGAATATAGAAATTATCTCAGAGGTTATCAACAACTCAGAACAAACGCAATCACCAACAGATGTTCAGATGGTAGAAGATGACGATAAAGAAACGGATAATAAGGAAGTGCAGGAAGTAGCAGACGACAGTGATACAAATAACGACAGCAAACAGGAAGATACTGTGGATGGAACTGTTTCAGTACGTGAGTCAGTTGATGAAACAGTTCCATCCACAGTTGAGGAGACTGACAAAGATGAAAGTAAAGCAGATCCGAAGGATTCTGTAGCCTTGTGTTCTATTAAAACCGAGCCGCCCGACGACGATGACGCGGATTGTATAGACTTAGACTCTCTGAATGACAGAGAGCTGCTGACCTCTTTGGCCTCAAAAGACGACACAGTCATGGAAGCAGATTCCACGCAAAAATCCAATGCTGCCCGCATATTGCCTAAAAAGAAGATACGACGTGGCCCTCATACTCATTACAGAGGTATGCGTACCTTTAAACAGAAATGCCCATTCTGTAAGATCTTCTTGCATTCTAAACAAACATACGTAAACCACATGAAGAAATTTCACTCTGAAAGAAATGATATCTCGAATTCAAACTCAGTATCGCAGAACGAGGAGGAGGAGATGGTAGAAGATCTGGAAGACGAACTGGCCAGCATGGAGCAGGAATCGCCATTGACGCCCGTTCAACAGGAGATAATCAGTCAATTGAAAACGTTCTCCTGCTACAGCTGCAATCAGACGTTCAACGATCGGCGCAGCACGCTTTTCCACATACGCCAGCATCTGCCAGACTTGAGACCGCACACGTGCATTGCCTGTTTGACTGAATTTCCCGATCGTTCATTGTATCAATCGCATTGCGGCGCGTCTTTCGAATGCGCCATGAAAATTGCCCTGGTCGTGCCGACGCGTGGTCACGAGCGATATTTCACGTGTAACATGTGTCTGCGCTCGATGCAGAGCAGGAAAGAACTGCTCAGTCACTTGTCAAAACATTCCGACAAGCAATACGAGGAAATGATGTCGCCAACGCGATCGCCGCCCAAACTGAAGCCAATGGCACCGTTGCCATCCGCGAAAAACAGTTCCGACAAACTGCAGAAATCCGGACCTTACAAGAACGGCGATCCGGCGCACAATCACATTTGCGATCTCTGCGGCATGATTTACAGATACCGACCCAATTTGTTCAAGCATAAAGAATACTGTAAACTATTAGACCCGGAAACCAGAATGACATACAAGTGCGTACACTGCCTTATGACTTTCCTTGTGTTTAAAAAATTCCATTCTCACATCACGGTCGATCATAAGAAGAAGGAGTTCACTTGCTTTGTATGTAACTCCAAATTCCGATCGCCCAGCGATTTTCTCACCCATCACGAGAAACATCGCGGCACGAAGAAGCAAGACGGCTCTTCGCAGAGTCAATTCCCGTTGAAAGAACGAAACGCTCACGAAGCGGATCCTCAGAGCTATACTTGCGCTCTTTGCAATCAGGAGTTCTCCACGAGATCCGAACTGTCCAAGCACCGAAGTATTCATCTCAAAGTGAAAATTTATTCCTGCGTCATATGTCACAGCATGTTCAGCAGCATTGGCGCTTTGGAAATCCACATGAAAGATCATGGCATTGACGATCCGGACGAACGGAATGCCAATATCTCTTGTGTCGAATATGGCAATTTGGATGAGGACATGAGGATCGAGAAGGACGTGGCGAACACCAGTAGTGTTTCGGATCCTGTCACGCAAGTCCACAAGTGCTGCGAGTGCGGCAAAATCATGAACACCTACGCCAATCTCCGTAGACACGCCAAAATCGCGCATCGAAACGCCACGATTTTCGAATGCATCGACTGCTCGCGAATGTTCACGCGTAAGGAGGTGTACGATCAGCATATGCAGTTGAAACACAAGAATACCAAGACAATGCTTCAGTGTCCCCAATGTCCTAAGAGTTTCGTCTTCCAGTCGAATTTCGCCTATCACTTCCGCACCGCTCATCTCGAGAAATCAGAAAACGGTTACGCTTGCAATATCTGCGGTAAAGTTTTCGAAGAGGAAGCGTCCTTGAAGATACACAAGGGTTGGCACAATCGCGCCAATTCTCGCCTGAGCACTCAGCATATACTGAGCAATCCGAACTCTTCGAAAGATTCCGGCGAATCGAGCGACAACGCGGAACGACCAGCGAGAGCCCGAAAGTCCTTCCCCAATCCTCCGCTTCAGTCACTAACAAAAACGTCTAATTTCGAATGTCAGGTATGCAACGACCAATTCAACAACGTTGCGGAACTGAGATCGCATCTGTGGGAGGTACACTGTGCTCGTAGCAAAACGGAAAAAAGCTTCACCAACAACGAGCTTCAGTGTGAGCTTTGCACCAACATTTTCCCCGATCGGGAAACCCTGGCGTCCCACATGCAGTGGCACAAAGCCAATCCCATTCTAAGCGAGGTGGGAAAGACATTTACTTGCGACGTATGCGGCAAACACTACAGTTCGAAGAAAGTCCTGTGGAAGCACAAAAGACTTCACAAAGCTACTGTTGTGGCCTCGATAAAGTTCCAATCTTTGGCTAGGAAACCAATGGCTAGCCAGTTTATGTGCACGTATTGTCGAAAGGTCTTCTCGAGCAGTCAGTCTTTGCAACGACACAAGCTTAGCTTCCACGCGCACGAGTCGCACAATCAGCAACGCGTGCAGCAACCGGTGCATAACAAAGGTCGTAAGATCTCGTTCAACTCGGAGGATGAGCCGGGAGCAAAGATTCCGAGATTGGATACCAACAGTGAAAACCCTTCGAGCAGACTACCGTCATTCTCCACCGACTTCGTTGGCGAGAAGAAGAAGTCCTTCATGTGTCATTTGTGCAAGAAGCTATTCCCCAACATGAGCGTGCTCTACAAACACAAACAATCGGTGCACAAGCCGCGAGCGTCGAAGGACCACTTGCCCGAATTCATACCAACTACGACCAAGGACGGCAAGTACTCGTGCAATGTTTGCTACAGGAAATTCCCCGGTCTGTCGAATCTACGACAACACTTTACGATTAAGCACAAAAAGATGTCGTCTCTCGTAATGTCCGATCAGCCGAGAAATCACGAGCTGACATCCAACAATGTCACGCACAAGACTTACGAATCAACTCACAATTACATGATATACAGCTGCAAGCTGTGCAAGCAGTGCCACGTCTTCAACAAAGATTCCATTATAAGCCATATCAACAATGTGCACAACACGGTGTACGAGGCCGACAGCAAGATGTTCCACCGGGAAACTAATCTGAACACCTACGTGGTGAAAGGCGCGATCGGGTCCACCTGTCCCCATTGCAACGTGAAATATCCGAACAACAAGGCTTTGAAGATACATTACATCAGGTATCACGAGGACGCCGATTGA
Protein Sequence: MNEDVVEIENVENVCRLCLSTDEPRSSVFAAQDEEDDSDVFLVDKIEECLSIQILATDKVSTLICTNCVKSVNQWHTYKESCLRSQNKLQEWLAKQQSNPMVITIKDEPMDIDNDQNIEIISEVINNSEQTQSPTDVQMVEDDDKETDNKEVQEVADDSDTNNDSKQEDTVDGTVSVRESVDETVPSTVEETDKDESKADPKDSVALCSIKTEPPDDDDADCIDLDSLNDRELLTSLASKDDTVMEADSTQKSNAARILPKKKIRRGPHTHYRGMRTFKQKCPFCKIFLHSKQTYVNHMKKFHSERNDISNSNSVSQNEEEEMVEDLEDELASMEQESPLTPVQQEIISQLKTFSCYSCNQTFNDRRSTLFHIRQHLPDLRPHTCIACLTEFPDRSLYQSHCGASFECAMKIALVVPTRGHERYFTCNMCLRSMQSRKELLSHLSKHSDKQYEEMMSPTRSPPKLKPMAPLPSAKNSSDKLQKSGPYKNGDPAHNHICDLCGMIYRYRPNLFKHKEYCKLLDPETRMTYKCVHCLMTFLVFKKFHSHITVDHKKKEFTCFVCNSKFRSPSDFLTHHEKHRGTKKQDGSSQSQFPLKERNAHEADPQSYTCALCNQEFSTRSELSKHRSIHLKVKIYSCVICHSMFSSIGALEIHMKDHGIDDPDERNANISCVEYGNLDEDMRIEKDVANTSSVSDPVTQVHKCCECGKIMNTYANLRRHAKIAHRNATIFECIDCSRMFTRKEVYDQHMQLKHKNTKTMLQCPQCPKSFVFQSNFAYHFRTAHLEKSENGYACNICGKVFEEEASLKIHKGWHNRANSRLSTQHILSNPNSSKDSGESSDNAERPARARKSFPNPPLQSLTKTSNFECQVCNDQFNNVAELRSHLWEVHCARSKTEKSFTNNELQCELCTNIFPDRETLASHMQWHKANPILSEVGKTFTCDVCGKHYSSKKVLWKHKRLHKATVVASIKFQSLARKPMASQFMCTYCRKVFSSSQSLQRHKLSFHAHESHNQQRVQQPVHNKGRKISFNSEDEPGAKIPRLDTNSENPSSRLPSFSTDFVGEKKKSFMCHLCKKLFPNMSVLYKHKQSVHKPRASKDHLPEFIPTTTKDGKYSCNVCYRKFPGLSNLRQHFTIKHKKMSSLVMSDQPRNHELTSNNVTHKTYESTHNYMIYSCKLCKQCHVFNKDSIISHINNVHNTVYEADSKMFHRETNLNTYVVKGAIGSTCPHCNVKYPNNKALKIHYIRYHEDAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01271431;
90% Identity: iTF_01267762;
80% Identity: -