Basic Information

Insect: Pseudomyrmex gracilis
Gene Symbol: -
Assembly: GCA_002006095.1
Location: NW:282146-289425[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 4.3 2.6e+02 1.7 0.2 2 17 64 79 63 80 0.87

2 19 0.63 38 4.3 4.3 2 23 281 303 280 303 0.97

3 19 1.6 94 3.1 2.9 1 23 354 376 354 376 0.91

4 19 0.022 1.3 9.0 1.5 1 23 425 447 425 447 0.98

5 19 0.0075 0.45 10.4 0.4 1 20 496 515 496 517 0.93

6 19 0.0059 0.35 10.7 3.9 1 23 557 579 557 579 0.98

7 19 2.1e-05 0.0013 18.4 0.9 1 23 610 632 610 632 0.98

8 19 0.00086 0.051 13.4 0.3 1 23 638 660 638 660 0.97

9 19 0.002 0.12 12.2 2.5 1 23 704 727 704 727 0.96

10 19 0.032 1.9 8.4 0.9 1 23 733 756 733 756 0.94

11 19 7.8e-06 0.00047 19.8 0.6 2 23 764 786 763 786 0.97

12 19 0.00019 0.011 15.4 0.0 1 23 794 816 794 816 0.92

13 19 0.25 15 5.6 0.1 1 20 869 888 869 888 0.96

14 19 0.0021 0.13 12.1 0.1 2 23 908 929 907 929 0.96

15 19 6.7e-05 0.004 16.9 3.0 1 23 942 964 942 964 0.98

16 19 1.6e-05 0.00097 18.8 3.2 1 23 986 1009 986 1009 0.96

17 19 0.0011 0.063 13.1 2.4 1 23 1070 1093 1070 1093 0.96

18 19 0.00045 0.026 14.3 1.4 1 23 1115 1138 1115 1138 0.93

19 19 0.00086 0.051 13.4 1.0 2 23 1227 1249 1226 1249 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	4.3	2.6e+02	1.7	0.2	2	17	64	79	63	80	0.87
2	19	0.63	38	4.3	4.3	2	23	281	303	280	303	0.97
3	19	1.6	94	3.1	2.9	1	23	354	376	354	376	0.91
4	19	0.022	1.3	9.0	1.5	1	23	425	447	425	447	0.98
5	19	0.0075	0.45	10.4	0.4	1	20	496	515	496	517	0.93
6	19	0.0059	0.35	10.7	3.9	1	23	557	579	557	579	0.98
7	19	2.1e-05	0.0013	18.4	0.9	1	23	610	632	610	632	0.98
8	19	0.00086	0.051	13.4	0.3	1	23	638	660	638	660	0.97
9	19	0.002	0.12	12.2	2.5	1	23	704	727	704	727	0.96
10	19	0.032	1.9	8.4	0.9	1	23	733	756	733	756	0.94
11	19	7.8e-06	0.00047	19.8	0.6	2	23	764	786	763	786	0.97
12	19	0.00019	0.011	15.4	0.0	1	23	794	816	794	816	0.92
13	19	0.25	15	5.6	0.1	1	20	869	888	869	888	0.96
14	19	0.0021	0.13	12.1	0.1	2	23	908	929	907	929	0.96
15	19	6.7e-05	0.004	16.9	3.0	1	23	942	964	942	964	0.98
16	19	1.6e-05	0.00097	18.8	3.2	1	23	986	1009	986	1009	0.96
17	19	0.0011	0.063	13.1	2.4	1	23	1070	1093	1070	1093	0.96
18	19	0.00045	0.026	14.3	1.4	1	23	1115	1138	1115	1138	0.93
19	19	0.00086	0.051	13.4	1.0	2	23	1227	1249	1226	1249	0.95

Sequence Information

Coding Sequence: ATGAACGAGGACGTTGTGGAAATTGAAAATGTGGAGAATGTCTGCAGACTCTGTCTCTCCGCGGACGAACCGAGGTCCTCGGTGTTCTCGGCACAGGAGCAGGAAGACGATTCTGATGTGTTACTGGTCGACAAGATTGAAGACTGTTTGTCGATACAGatattaGCAACCGATAAAGTATCTACATTGATATGTAAAACTTGTGTGAAAAGTGTCAATCAGTGGCACACTTATAAAGAGTCATGCCTGCGCTCTCAAAACAAGTTGCAAGAATGGTTGGCAAAGCAGCACTCAAATCCCATGGTTATAACAATCAAGGATGAACCAATGGACGTTGATAACGATGAGAATATAGAAATTATCTCAGAAGTCATTAACAATTCCGAACAAATACAGTCACCAACAGATGTTCAGATGGTAGAAGATGATGGTAAAGAAACGGATAATAAGGAAGTGCAGAAAGTGACAGATAATAGTGACACAAATAACGACAATAAACAGGAAGATACTGTGGATGGAACTGTTTCGGTACGCGAGTCAGTTGATGAAACAGTTCCATCCACAGTTGAGGAGACTGACAAAGATGAAAGTAAAGCAGACCCGAAAGATTCTATAGCTTTATGTTCTATTAAAACCGAGCCGCCAGACGACGATGACGCGGATTGCATAGACTTAGACTCTCTGAACGACAGAGAGTTGATGAATTCTTTGGCCTCAAAAGATGACACAGTTATGGAAGCTGATTCCACGCAAAAATCCAATGCCGCCCGCATATCGCCTAAAAAGAAGATGCGACGTGGTCCTCATACTCATTACAGAGGTATGCGTACCTTTAAACAGAAATGCCCATTCTGTAAGATCTTCTTGCATTCTAAACAAACATACGTAAACCACATGAAGAAATTTCACTCTGAAAGAAATGATATATCAAATTCAAACTCAGTATCGCAgaacgaggaggaggagatgGTAGAAGATCTGGAAGACGAACTGGCCAGCATGGAGCAGGAGTCGCCATTGACACCCGTTCAACAGGAGATAATCAGTCAATTGAAAACGTTCTCCTGCTACAGCTGCAATCAGACGTTCAACGATCGGCGCAGTACGCTTTTCCACATACGCCAGCACCTGCCAGACTTGAGACCGCACACATGCATTGCCTGTTTGACTGAATTTCCCGATCGTCCATTATATCAATCGCATTGCGGCGCGTCTTTCGAATGCGCCATGAAGATTGCCCTGGTCGTGCCAACGCGCGGTCACGAGCGATATTTCACGTGTAACATGTGTCTGCGCTCGCTGCAGAGCAGGAAAGAACTGCTCAGTCACTTGTCGAAACATTCCGACAAGCAATACGAGGAAATGATGTCGCCAACGCGATCGCCGCCCAAACTTAAGCCAATGGCACCGTTGCCATCCGCGAAAAGCAGTTCCGATAAGCCGCAGAAATCCGGACCTTACAAGAACGGCGATCCGGCGCACAATCATATTTGCGATCTCTGCGGCATGATTTACAGATACCGACCCAATTTGTTCAAGCATAAAGAATACTGCAAACTATTAGACCCAGAAACTAGAATGACATACAAATGCGTACACTGCCTTATGACTTTccttgtgtttaaaaaattccaTTCTCACATCACGGTTGATCACAAAAAGAAGGAGTTCACGTGCTTCGTATGTAACTCCAAATTCCGATCGCCCAGCGATTTCCTCACCCATCACGAGAAACATCGCGGCACGAAGAAGCACGACGGGGCTTCGCAGAGCACGGGCCAGTTCCCGTTGAAGGAACGAAACGCTCACGAAGCGGATCCTCAGAGCTACACTTGCGCTCTTTGCAATCAGGAATTTTCCACGAGATCCGAACTGTCCAAGCACCGAAGTATTCATCTTAAAGTAAAAATCTATTCCTGTGTCATATGTCACAGCATGTTCAGCAGCATCGGCGCTTTGGAAATCCACATGAAAGATCATGGCATTGACGATCCGGACGAACGGAATGCCAACATTTCCTGCGTCGAATATGGCAACTTGGACGAGGATATGAGAATTGAGAAAGACGTGGCAAACACCAGCAGTGTTTCTGATCCTGGCACGCAAGTTCACAAGTGTTGCGAGTGTGGCAAGATCATGAACACCTATGCCAATCTCCGTAGACACGCCAAAATCGCGCATCGGAACGCAACTATCTTCGAATGCATCGACTGCTCGCGAATGTTCACGCGTAAAGAGGTGTACGATCAGCATATGCAGTTGAAACACAAGAATACCAAGACAATGCTTCAGTGTCCTCAATGTCCTAAGAGTTTCGTCTTCCAGTCGAATTTTGCCTATCACTTCCGTACCGCTCATCTCGAGAAATCAGAAAATGGTTACGCTTGCAATATCTGCGGTAAAGTTTTTGAAGAAGAAGCGTCCTTGAAGATACACAAAGGTTGGCACAATCGCGCCAATTCTCGCCTGAGCACTCAGCATATACTGGGCAATCCGAATTCTTCGAAAGATTCCGGCGAATCGAGCGATAACGCGGAACGACCAGCTAGAGCCCGAAAGTCCTTCCCCAATCCTCCGCTCCAGTCACTAACGAAAGCGTCTAATTTTGAATGTCAGGTATGCAACGACCAATTCAACAGCGTTGCGGAACTGAGATCGCATCTGTGGGAGGTTCATTGCGCTCGTAGCAAAACGGAAAAAAGCTTCACCAACAACGAGCTTCAGTGTGAGCTTTGCACCAACATTTTCCCCGATCGGGAAACCCTGGCGTCCCACATGCAGTGGCACAAAGCCAATCCCATTCTCAGCGAGGTGGGAAAGACATTCACTTGCGACGTGTGCGGCAAACACTACAGTTCGAAGAAAGTTCTGTGGAAGCACAAAAGACTTCACAAATCTACTGTTGTGGCCTCGATGAAGTTCCAGTCTTTGGCTAGGAAGCCCATGGCCAGCCAGTTTATGTGCACGTATTGTCGAAAGGTCTTCTCGAGCAGTCAGTCTTTGCAACGACACAAGCTTAGCTTCCACGCGCACGAGTCCCACAATCAGCAACGCGTGCAGCAACCGGTGCATAAAGGCCGTAAGATCTCGATCAATTCGGAGGATGAGACGAGAGCAAAGATTCCGAGATTGGATATCGACAGTGAAAATCCTTCGAGCAGACTACCGTCATTCTCCACGGACTTTGTTGGCGAGAAGAAAAAGTCCTTCATGTGTCATTTGTGCAAGAAGGTATTCCCCAACATGAGCGTGCTCTACAAACATAAACAATCGGTGCACAAGCCGCGAGCGTCGAAGGACCACTTGCCTGAGTTTATACCGACCACGACCAAGGACGGCAAGTACTCGTGTAATGTCTGCTACAAGAAATTCCCCGGTCTGTCGAATCTACGACAACACTTTACGATtaagcacaaaaaaatttcgtcTCTCGTAGTGTCTGATCAGCCGAGAAATCACGAGGTGACCTCCAACAATGTCACGCACAAGACTTACGAATCGACTCACAATTACATGATATACAGCTGCAAGCTGTGCAAGCAGTGCCACGTCTTTAACAAAGATTCCATTGTGAGCCATATCAACAATGTGCACAACACGGTGTACGAGGCCGACAGCAAGATGTTCCATCGGGAGACTAATCTAAACACCTACGTGGTGAAGGGCGCGATCGGGTCCACCTGTCCCCATTGCAACGTCAAATACCCGAACAACAAGGCTTTGAAGATACATTACATTAGGTATCACGAGGACGCCGATTGA
Protein Sequence: MNEDVVEIENVENVCRLCLSADEPRSSVFSAQEQEDDSDVLLVDKIEDCLSIQILATDKVSTLICKTCVKSVNQWHTYKESCLRSQNKLQEWLAKQHSNPMVITIKDEPMDVDNDENIEIISEVINNSEQIQSPTDVQMVEDDGKETDNKEVQKVTDNSDTNNDNKQEDTVDGTVSVRESVDETVPSTVEETDKDESKADPKDSIALCSIKTEPPDDDDADCIDLDSLNDRELMNSLASKDDTVMEADSTQKSNAARISPKKKMRRGPHTHYRGMRTFKQKCPFCKIFLHSKQTYVNHMKKFHSERNDISNSNSVSQNEEEEMVEDLEDELASMEQESPLTPVQQEIISQLKTFSCYSCNQTFNDRRSTLFHIRQHLPDLRPHTCIACLTEFPDRPLYQSHCGASFECAMKIALVVPTRGHERYFTCNMCLRSLQSRKELLSHLSKHSDKQYEEMMSPTRSPPKLKPMAPLPSAKSSSDKPQKSGPYKNGDPAHNHICDLCGMIYRYRPNLFKHKEYCKLLDPETRMTYKCVHCLMTFLVFKKFHSHITVDHKKKEFTCFVCNSKFRSPSDFLTHHEKHRGTKKHDGASQSTGQFPLKERNAHEADPQSYTCALCNQEFSTRSELSKHRSIHLKVKIYSCVICHSMFSSIGALEIHMKDHGIDDPDERNANISCVEYGNLDEDMRIEKDVANTSSVSDPGTQVHKCCECGKIMNTYANLRRHAKIAHRNATIFECIDCSRMFTRKEVYDQHMQLKHKNTKTMLQCPQCPKSFVFQSNFAYHFRTAHLEKSENGYACNICGKVFEEEASLKIHKGWHNRANSRLSTQHILGNPNSSKDSGESSDNAERPARARKSFPNPPLQSLTKASNFECQVCNDQFNSVAELRSHLWEVHCARSKTEKSFTNNELQCELCTNIFPDRETLASHMQWHKANPILSEVGKTFTCDVCGKHYSSKKVLWKHKRLHKSTVVASMKFQSLARKPMASQFMCTYCRKVFSSSQSLQRHKLSFHAHESHNQQRVQQPVHKGRKISINSEDETRAKIPRLDIDSENPSSRLPSFSTDFVGEKKKSFMCHLCKKVFPNMSVLYKHKQSVHKPRASKDHLPEFIPTTTKDGKYSCNVCYKKFPGLSNLRQHFTIKHKKISSLVVSDQPRNHEVTSNNVTHKTYESTHNYMIYSCKLCKQCHVFNKDSIVSHINNVHNTVYEADSKMFHRETNLNTYVVKGAIGSTCPHCNVKYPNNKALKIHYIRYHEDAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01271431;
90% Identity: iTF_01267762;
80% Identity: -