Pgra001916.1
Basic Information
- Insect
- Pseudomyrmex gracilis
- Gene Symbol
- -
- Assembly
- GCA_002006095.1
- Location
- NW:593304-597235[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.4 2.6e+02 1.7 0.2 2 21 116 134 115 135 0.82 2 14 0.00047 0.028 14.2 1.5 2 20 142 160 141 163 0.94 3 14 0.00027 0.016 15.0 1.1 1 23 169 192 169 192 0.94 4 14 8.7e-05 0.0052 16.5 0.4 1 23 198 220 198 220 0.99 5 14 0.0021 0.12 12.2 0.8 2 23 381 402 381 402 0.98 6 14 0.033 2 8.4 0.4 2 21 410 429 409 430 0.93 7 14 0.0022 0.13 12.1 1.8 1 19 456 474 456 478 0.91 8 14 0.00029 0.017 14.9 0.1 1 23 483 506 483 506 0.96 9 14 1.1e-06 6.3e-05 22.5 0.3 1 23 512 534 512 534 0.98 10 14 0.00012 0.0072 16.0 2.2 1 23 541 563 541 563 0.99 11 14 0.00015 0.0087 15.8 0.7 3 23 571 591 569 591 0.97 12 14 0.00011 0.0065 16.2 0.2 1 23 597 620 597 620 0.96 13 14 0.42 25 4.9 0.1 1 23 634 656 634 656 0.93 14 14 0.00011 0.0064 16.2 0.1 1 23 910 932 910 932 0.97
Sequence Information
- Coding Sequence
- ATGGAGGCTCATGAGAGCGAGCAGTATGTAACATTTTCTCTTGATGGTGTACATGACACAGTACAGGAGAACATAATATCTCATGAAGAAATATGCGAACCCGTTGAATGTGTTCTCCAGGATGAACTTACTAATGCTGTCAGTACTGACATGGAGACACAGGAGGATGCTGACAAGATTCTTAGGGAACAGTCGGATGAGGAAGATGAGAATACAGTAGAGTATCCAATATATATTAAGGAAGAGGAACAACAGCAGTATATGTCAGGTGATGATGAGTCCATGGCTGTGGAAGCCCTGCGCCAGTTAGGTGGTATGTATCCAAGCTTTGAAGGTAAAAAACTCAGTTGCCCAACTTGTAAGAGTCTTTTTACCCAAGAAGAAATGGTTAAACATCGGTCTACATGTACAGAATCAAAGCTGTCCTGCACAACTTGTGGAGAAAAATTTGAGAGAAAGATTGACCTAAATAACCATATGGTTTGTCATCAAGTGGATCGTCCACATGCCTGCAGAACATGTGGTAATTTATTTCGTTCCAAGAGTAGTCTGAACGCTCACATGTTGCAAGCACATCAGGTTGAACGGCCATATAAGTGTACTGTCTGCGGATCTGATTTTTTGAGGCCTTCTAGTTTGTCCAATCATATGAAAATTCACTCATATGTTCCGGGACGAGGTATTGCGCAATCACAGAGAAATCTTATATCTCAGTCAGCAGAAACGTTTAGGAAATGGCCAGAGAATGCATCGGATTCACAGAATATATCACACACGACATCTTCATCTGTGCAAACTATTCATAATTATGATGTATGTCAAGTTCAATGGCCTACATCAACATACAATTTCCAGAATGAGCAATCAATAGTCACAACGATGTCAAATCAACAAGAAAAGATAGAAACATTACAGGAGTTTACAGTAATTCCCAACGATGAGATATCACAATTTGCTGAATACACTGaccaaaataatattaacaattcaGTTAATACTACTCAACAGTACAATCTAAcaataaattcatttaataCTCCCGATGGTATAGTTAAAGTACAGTCccttatacaaaataatacgaatagagattttaaagaaaccgAAACAAACAATagcaaacaatatataaacacaaacACATGTAAACATTGTGGAGTCTACTTCGCACGTGTACAAGCATTGGTGTCACATGAGAAGACTCATAAAGAGTGGATCAATCCAGTTGAATGCCAGTACTGCGAAAGACAGTTTCAGGACGGGAATCATCTGGCTACTCATCAGACTACTTGCGCTAAGAAGATAATCCAAAACAAGGACAAAAACGGATCCAACAACAAATTAGCGTGCAAATTGATATGCAAACACGCTTGCTCGgaatgtggaaaaaaatttccaaCCAAACAGAAGATGTATCGTCACAAATGGATTCATCGAAAGAAAACTTACTCATGCGAAGTGTGCGGTTTGCAGTTTGAGAAGCAGAGCGAATTAGACGAACATCGGCTGTCGGCACATCCCGGAGATTCGCCATTTACTTGCACGGAATGTGGAAAAAGCTTTGTATCGCGACAAGGTCTTTGGGAACACGGTAGAACGCATGCCGGAAGCCCGGCGCATTTTCAGTGTGACACCTGTTCGAAGACATTTTCATCTCGCCAGggatatttaatacataatcGTACGCACACCGGCGAACGACCGTACGGTTGCAAGTTTTGTTGGAAATCCTTCCGAGACGGCGGAACTCTACGGAAACACGAACGGATTCACACAGGTGAGAGACCTCACGTGTGTCCAATATGCACGAGAGCTTTTAATCAAAAGGTAGTTTTGCGCGAGCATGTTCGATGGGTTCACGCCGCAGGAAAAAATGAGACGGAAAAAAGCGATCCTCCGTATCCCTGTCCACTTTGCGGTGCTCTGAACCAAGACCGCGATGAGCTTTGTGCACACATCGTCAAGCATTCGGACCAAATGATTGCCGAAGCTAAAGCGAAAAACGTTAATATTTCTCCGAAGATAAAGCCAACGAAGAAAAAGGCAAAGACGTCCTCCTGTGGCATCGACGTACAGACGAAAGAAGACACGTTAGAGAATCTTATTTCGAAAACGGATCAAGCCAAAGCCATATTATCTATTACAGACACGTCTGATAATCCGGATGATTTGAACGTTATGAACGAAAAACAGAACAATGCCTTTGTTGTGGTTACCACGGATAAACGCAGCGACGGTTTTATATCGATATCCGAGCTCAAGCACAGCAACATAGAATTCATCGTAGAAAGCAAAGAAGACGAGAATATTCATGTACTTCAAATGGATAGAAATCCCAGAGATcctttaaatataattaccaTGGGCAAGCAAAACAACACGGCGCACATCGTGTCAACGGTGTCCGTCGACAGCGCTCTCGATGAAACTATCAGGTCGAACAATATGTCCGCGATGCAGTTGATCCAGTCTTCTAAGCAGAACAACACTTTAAACATAATATCGAAGCAAAACGAAGCGTTACCCGTTTTAACAATTCCTAATCCTCAAAATCACGATAATTACTCCAGTCAGATCATACAAGTAAACACTACAAACATGCCTATAGATATAGTAACTCAAGATGAGGAAAATCATACCCAAAACGAACAAGACTCTTTAATACAAGAAGAAACATCTCATGTTATTCAAGTTGTACCTTATCAGGATGACAGTGATGGAGAGGACTTTATATGTGGAATATGTGCAGAAGGGTTTGATGATAAGGAGTCGTTAAAGACGCACATTAAGattcatatataa
- Protein Sequence
- MEAHESEQYVTFSLDGVHDTVQENIISHEEICEPVECVLQDELTNAVSTDMETQEDADKILREQSDEEDENTVEYPIYIKEEEQQQYMSGDDESMAVEALRQLGGMYPSFEGKKLSCPTCKSLFTQEEMVKHRSTCTESKLSCTTCGEKFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKSSLNAHMLQAHQVERPYKCTVCGSDFLRPSSLSNHMKIHSYVPGRGIAQSQRNLISQSAETFRKWPENASDSQNISHTTSSSVQTIHNYDVCQVQWPTSTYNFQNEQSIVTTMSNQQEKIETLQEFTVIPNDEISQFAEYTDQNNINNSVNTTQQYNLTINSFNTPDGIVKVQSLIQNNTNRDFKETETNNSKQYINTNTCKHCGVYFARVQALVSHEKTHKEWINPVECQYCERQFQDGNHLATHQTTCAKKIIQNKDKNGSNNKLACKLICKHACSECGKKFPTKQKMYRHKWIHRKKTYSCEVCGLQFEKQSELDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFQCDTCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKSFRDGGTLRKHERIHTGERPHVCPICTRAFNQKVVLREHVRWVHAAGKNETEKSDPPYPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKNVNISPKIKPTKKKAKTSSCGIDVQTKEDTLENLISKTDQAKAILSITDTSDNPDDLNVMNEKQNNAFVVVTTDKRSDGFISISELKHSNIEFIVESKEDENIHVLQMDRNPRDPLNIITMGKQNNTAHIVSTVSVDSALDETIRSNNMSAMQLIQSSKQNNTLNIISKQNEALPVLTIPNPQNHDNYSSQIIQVNTTNMPIDIVTQDEENHTQNEQDSLIQEETSHVIQVVPYQDDSDGEDFICGICAEGFDDKESLKTHIKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01268455;
- 90% Identity
- iTF_01267746; iTF_01268455; iTF_01269234; iTF_01267029; iTF_01269978; iTF_01271402;
- 80% Identity
- -