Pelo032217.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudomyrmex elongatus
Gene Symbol
-
Assembly
GCA_014825605.1
Location
QVNY01018193.1:53274-56081[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.00063 0.13 14.2 1.5 2 20 147 165 146 168 0.94
2 13 0.00036 0.073 15.0 1.1 1 23 174 197 174 197 0.94
3 13 0.00038 0.079 14.9 0.5 1 23 203 225 203 225 0.99
4 13 0.0028 0.57 12.2 0.8 2 23 384 405 384 405 0.98
5 13 0.044 9.1 8.4 0.4 2 21 413 432 412 433 0.93
6 13 0.0029 0.6 12.1 1.8 1 19 459 477 459 481 0.91
7 13 0.00039 0.08 14.8 0.1 1 23 486 509 486 509 0.96
8 13 6.6e-06 0.0013 20.4 0.2 1 23 515 537 515 537 0.98
9 13 0.00016 0.034 16.0 2.2 1 23 544 566 544 566 0.99
10 13 0.0002 0.04 15.8 0.7 3 23 574 594 572 594 0.97
11 13 0.00069 0.14 14.1 0.1 1 23 600 623 600 623 0.96
12 13 1.4 2.8e+02 3.7 0.2 1 23 637 659 637 659 0.89
13 13 0.00015 0.03 16.2 0.1 1 23 912 934 912 934 0.97

Sequence Information

Coding Sequence
ATGGAGACTCATGAGAGTGAGCAATATGTAACATTTTCTCTTGATGGTGTACATGATACCGTGCAGGAGAACATAATATCTCATGAAGAAATATGCGAACCCGTTGAATGTGTTCTCCAGGATGAACTTACAGAAGTCTCAGTTAATAATACTGTCAATACTGACATGGAGACACAGGAGGATGCTGACAAGATTCTTAGGGAACAGTCGGATGAAGAAGATGACAATACAGAGTATCCAATATACATTAAGGAAGAGGAACAACAACAGTATATGTCAGGTGATGATGAGTCTATGGCTGTGGAAGCTTTGCGCCAGTTAGGTGGTGGTATGTATTCAAGCTTTGAAGGTAAAAAAATCAGTTGCCCAACTTGTAAAAATCTTTTTACCCAAGAAGAAATAGTTAAACATCGGTCTACATGTACAGAATCAAAGCTGTCCTGCACAACTTGTGGAGAAAAATTTGAGAGAAAAATTGACCTAAATAACCATATGGTTTGCCATCAAGTGGATCGTCCACATGCCTGCAGAACATGTGGTAATTTATTTCGTTCCAAGAGCAGTCTGAATGCTCACATGTTGCAAGCACATCAGGTTGAACGGCCATACAAGTGTAATATCTGTGGATCTGACTTTTTGAGGCCTTCTAGTTTGTCTAATCACACGAAGATTCACTCATATGTCCCAGGACGAGGTATCGCGCAATCACAGAGAAATCTTATGTCTCAGTCAGCGGAAACATTTAGGAAATGGCCAGAATCGGATTCACAAAATATATCACAGACGTCATCTTCATCTGTACAAACTATTCAAAATTACGATGTATGTCAAGTTCAATGGCCCGCGTCAACATATAATTTCCAGAACGAGCAATCAATAGTCACAACAATGTCGAATCAACAAGAAAAGATAGAAACGTTACAGGAATTTACGGTAATTCCCAACGATGAGGTATCACAATTTACCGAATACACTGACCAAAATAATATTAACAATTCAGTTAATACCACTCAACAATACAATTTAACAATAAATTCATTTAACACTCCCGATGGTATAGTTAAAGTACAGTCACTTATACAAAATAACACAAATAGAGATTTTAAAGAAATCGAAACAAACAATAGCAAACAATATATAAACACAAACACATGTAAACATTGTGGAGTCTACTTCGCACGTGTACAAGCATTGGTATCACACGAGAAGACTCATAAAGAATGGATCAATCCAGTTGAATGCCAGTATTGCGAAAGACAGTTTCAAGACGGGAATCATCTGGCTACTCATCAAACTACTTGCGCTAAGAAGATAATCCAAAACAAGGACAAAAACGGATCCAACAACAAGTTAGCGTGTAAACTAATATGCAAACACGCTTGCTCGGAATGTGGAAAGAAATTTCCAACCAAACAGAAGATGTATCGTCACAAATGGATTCATCGAAAGAAAACTTACTCATGCGAAGTGTGCGGTTTGCAGTTCGAAAAGCAGAGCGAATTAGACGAACATAGGCTGTCGGCGCATCCGGGAGATTCACCATTTACTTGCATGGAATGTGGAAAAAGTTTTGTGTCGCGACAAGGTCTTTGGGAACACGGTAGAACGCACGCTGGAAGCCCGGCGCATTTTCAGTGTGACACTTGTTCGAAGACATTTTCATCTCGCCAGGGATATTTAATACATAATCGCACGCACACCGGCGAACGACCATACGGTTGCAAATTCTGTTGGAAATCCTTTCGAGACGGTGGAACTCTACGGAAACACGAACGGATTCACACAGGTGAGAGACCTCACGTGTGTCCGATATGCGCGAGAGCTTTTAATCAAAAGGTAGTTTTGCGCGAGCATGTTCGATGGGTTCACGCCGCAGGAAAGAATGAGACGGAAAAAAGCGGTCCTCCGTATCCCTGTCCACTTTGCGGTTCTCTGAATCAGGATCGCGATGAACTTTGTGCACACATCGTCAAGCATTCGGACCAAATGATTGCCGAAGCTAAAGCGAAAAACGTTAACATTTCTCCGAAGATAAAGCCAACGAAGAAAAAGACAAAGACGTCTTCTTGTGGCATCGACGTACAGACAAAAGAAGACACGTTGGAAAATCTTATTTCAAAAACGGATCAAGCCAAAGCCATATTATCCATTACGAACACGTCTGATAATCCGGATGATTTGAACGTTATGGACGAAAAACAAAACAATGCCTTTGTCGTGGTTACCACAGATAAACGCAGCGACGGTTTTATATCGATATCCGAGCTCAAGCACAGCAACATAGAATTCATCGTGGAGAGCAAAGAAGATGAGAACATTCATGTACTTCAAATGGATGGGAATCCCAGAGATCCTTTAAGTATAATTACCATGGGCAAGCAAAACAACACGGCGCACATTGTGTCAACGGTGTCGGTCGACAGTGCTCTCGATGAAACCATCAGGTCGAACAATATGTCCGCGATGCAGTTGATTCAGTCTTCTAAGCAGAACAACACTTTAAACATAATATCAAAGCAGAACGAATCGTTACCGGTTTTAACTATTCCTAATCCTCAAAATCACGATAATTACTCCAGTCAGATCATACAAGTAAACACTGCAAACATGCCTATAGATATAGTAACTCAAGATGAGGAAAATCATACCCAGAACGAGCAAGACTCTTTAATACAAGAAGAAACATCTCACGTTATTCAAGTATCTTATCAGGATGACAGTGGCGGAGAGGACTTTATATGTGGAATATGTGCAGAAGGGTTTGATGATAAAGAGTCGTTAAAGACTCACATTAAGATTCATATATAA
Protein Sequence
METHESEQYVTFSLDGVHDTVQENIISHEEICEPVECVLQDELTEVSVNNTVNTDMETQEDADKILREQSDEEDDNTEYPIYIKEEEQQQYMSGDDESMAVEALRQLGGGMYSSFEGKKISCPTCKNLFTQEEIVKHRSTCTESKLSCTTCGEKFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKSSLNAHMLQAHQVERPYKCNICGSDFLRPSSLSNHTKIHSYVPGRGIAQSQRNLMSQSAETFRKWPESDSQNISQTSSSSVQTIQNYDVCQVQWPASTYNFQNEQSIVTTMSNQQEKIETLQEFTVIPNDEVSQFTEYTDQNNINNSVNTTQQYNLTINSFNTPDGIVKVQSLIQNNTNRDFKEIETNNSKQYINTNTCKHCGVYFARVQALVSHEKTHKEWINPVECQYCERQFQDGNHLATHQTTCAKKIIQNKDKNGSNNKLACKLICKHACSECGKKFPTKQKMYRHKWIHRKKTYSCEVCGLQFEKQSELDEHRLSAHPGDSPFTCMECGKSFVSRQGLWEHGRTHAGSPAHFQCDTCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKSFRDGGTLRKHERIHTGERPHVCPICARAFNQKVVLREHVRWVHAAGKNETEKSGPPYPCPLCGSLNQDRDELCAHIVKHSDQMIAEAKAKNVNISPKIKPTKKKTKTSSCGIDVQTKEDTLENLISKTDQAKAILSITNTSDNPDDLNVMDEKQNNAFVVVTTDKRSDGFISISELKHSNIEFIVESKEDENIHVLQMDGNPRDPLSIITMGKQNNTAHIVSTVSVDSALDETIRSNNMSAMQLIQSSKQNNTLNIISKQNESLPVLTIPNPQNHDNYSSQIIQVNTANMPIDIVTQDEENHTQNEQDSLIQEETSHVIQVSYQDDSGGEDFICGICAEGFDDKESLKTHIKIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01268455;
90% Identity
iTF_01270688;
80% Identity
-