Pden001118.1
Basic Information
- Insect
- Pseudomyrmex dendroicus
- Gene Symbol
- -
- Assembly
- GCA_014825645.1
- Location
- QVNZ01002048.1:755-3550[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00057 0.067 14.2 1.5 2 20 144 162 143 165 0.94 2 13 0.00033 0.038 15.0 1.1 1 23 171 194 171 194 0.94 3 13 4.6e-05 0.0053 17.7 0.4 1 23 200 222 200 222 0.99 4 13 0.0025 0.29 12.2 0.8 2 23 381 402 381 402 0.98 5 13 0.04 4.7 8.4 0.4 2 21 410 429 409 430 0.93 6 13 0.0026 0.31 12.1 1.8 1 19 456 474 456 478 0.91 7 13 0.00035 0.041 14.9 0.1 1 23 483 506 483 506 0.96 8 13 1.3e-06 0.00015 22.5 0.3 1 23 512 534 512 534 0.98 9 13 0.00015 0.017 16.0 2.2 1 23 541 563 541 563 0.99 10 13 0.00018 0.021 15.8 0.7 3 23 571 591 569 591 0.97 11 13 0.00062 0.073 14.1 0.1 1 23 597 620 597 620 0.96 12 13 1.3 1.5e+02 3.7 0.2 1 23 634 656 634 656 0.89 13 13 0.00013 0.015 16.2 0.1 1 23 908 930 908 930 0.97
Sequence Information
- Coding Sequence
- ATGGAGAGTGAGCAATATGTGACATTTTCTCTTGATGGTGTACATGATACCGTACAGGAGAACATAATATCTCATGAAGAAATATGCGAACCCGTTGAATGTGTTCTCCAGGATGAACTTACAGAAGTCTCAGTTAATAATACTGTCAATACTGACATGGAGACACAGGAGGATACTGACAAGATTCTTAGGGAACAGTCGGATGAAGAAGATGACAATACAGTAGAGTATCCAATATACATTAAGGAAGAGGAACAACAACAGTATATGTCAGGTGATGATGAGTCTATGGCTGTGGAAGCTTTGCGCCAGTTAGGTGGTATGTATCCAAGCTTTGAAGGTAAAAAAATCAGTTGCTCAACTTGTAAGAATCTTTTTACCCAAGAGGAAATAGTTAAACATCGGTCTACATGTACAGAATCAAAGCTGTCTTGCACAACTTGTGGAGAAAAATTTGAGAGAAAGATTGACCTAAATAACCATATGGTTTGCCATCAAGTGGATCGTCCACATGCCTGCAGAACATGTGGTAATTTATTTCGTTCCAAGAGCAGTCTGAATGCTCACATGTTGCAAGCACATCAGGTTGAACGGCCATATAAATGTAATATCTGTGGATCTGACTTTTTGAGGCCTTCTAGTTTGTCTAATCACATGAAGATTCACACATATGTCCCGGGACGAGGTATCGCGCAATCACAGAGGAATCTTATATCTCAGTCAGCGGAAACATTTAGGAAATGGCCAGAATCGGATTCACAAAATATATCACAGACGTCATCTTCATCTGTGCAAACTATTCAAAATTACGATGTATGTCAAGTTCAATGGCCCGCGTCAACATATAATTTCCAGAACGAGCAATCAATAGTCACAACAATGTCGAATCAACAAGAAAAGATAGAAACTTTACAGGAATTTACGGTAATTCCCAACGATGAAGTATCACAATTTACCGAATACACTGACCAAAATAATATTAACAATTCAGTTAATACCACTCAACAGTACAATTTAACAATAAATTCATTTAATACTCCCGATGGTATAGTTAAAGTACAATCACTTATACAAAATAACACAAATAGAGATTTTAAAGAAATCGAAACAAACAATAGCAAACAATATATAAACACAAACACATGTAAACATTGTGGAGTCTACTTCGCACGTGTACAAGCATTGGTATCACATGAGAAGACTCATAAAGAATGGATCAATCCAGTTGAATGCCAGTACTGCGAAAGACAGTTTCAAGACGGGAATCATCTGGCTACTCATCAGACTACTTGCGCTAAGAAGATAATCCAAAACAAGGACAAAAACGGATCCAACAACAAGTTAGCGTGTAAACTAATATGCAAACACGCTTGCTCGGAATGTGGAAAGAAATTTCCAACCAAACAGAAGATGTATCGTCACAAATGGATTCATCGAAAGAAAACTTACTCATGCGAAGTGTGCGGTTTGCAGTTCGAAAAGCAGAGCGAATTAGACGAACATAGGCTGTCGGCGCATCCAGGAGATTCACCATTTACTTGCACGGAATGTGGAAAAAGTTTCGTGTCGCGACAAGGTCTTTGGGAACACGGTAGAACGCACGCCGGAAGCCCGGCACATTTTCAGTGTGACACCTGTTCGAAGACATTTTCATCTCGTCAGGGATATTTAATACATAATCGCACGCACACCGGCGAACGACCATACGGTTGCAAGTTCTGTTGGAAATCCTTTCGAGACGGCGGAACTCTACGGAAACATGAACGGATTCACACAGGTGAAAGACCTCACGTGTGTCCGATATGCGCGAGAGCCTTTAATCAAAAGGTAGTTTTGCGCGAGCATGTTCGATGGGTTCACGCCGCAGGAAAAAATGAGACGGAAAAAAGCGGTCCTCCGTATCCCTGTCCACTTTGCGGTTCTCTGAATCAGGATCGCGATGAGCTTTGTGCACATATCGTCAAGCATTCGGACCAAATGATTGCCGAAGCTAAAGCGAAAAACGTTAACATTTCTCCGAAGATAAAGCCAACGAAGAAAAAGGCAAAGACGTCTTCTTGTGGCATCGACGTACAGACGAAAGAAGACACGTTGGAAAATCTTATTTCAAAAACGGATCAAGCCAAAGCCATATTATCTATTACGGACACGTCTGATAATCCGGATGATTTGAACGTTATGGACGAAAAACAAAACAATGCCTTTGTCGTGGTTACCACAGATAAACGTAGCGACGGTTTTATATCGATATCCGAGCTCAAGCACAGCAACATAGAATTCATCGTGGAGAGCAAAGAAGATGAGAACATTCATGTACTTCAAATGGATCGGAATCCCAGAGATCCTTTAAGTATAATTACCATGGGCAAGCAAAACAACACGGCGCACATTGTGTCAACGGTGTCTGTCGACAGCGCTCTCGACGAAACCATCGGGTCGAACAATATGTCCGCGATGCAGTTGATTCAGTCTTCTAAGCAGAACAACACTTTAAACATAATATCAAAGCAGAACGAATCGTTACCCGTTTTAACGATTCCTAATCCTCAAAATCACGATAATTACTCCAGTCAGATCATACAAGTAAACACTGCAAACATGCCTATAGATATAGTAACTCAAGAGGAAAATCATACTCAGAACGAGCAAAACTCTTTAATACAAGAAGAAACATCTCACGTTATTCAAGTATCTTATCAGGATGACAGTGACGGAGAGGACTTTATATGTGGAATATGTGCAGAAGGGTTTGATGATAAAGAGTCGTTAAAGACTCATATTAAGATTCATATATAA
- Protein Sequence
- MESEQYVTFSLDGVHDTVQENIISHEEICEPVECVLQDELTEVSVNNTVNTDMETQEDTDKILREQSDEEDDNTVEYPIYIKEEEQQQYMSGDDESMAVEALRQLGGMYPSFEGKKISCSTCKNLFTQEEIVKHRSTCTESKLSCTTCGEKFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKSSLNAHMLQAHQVERPYKCNICGSDFLRPSSLSNHMKIHTYVPGRGIAQSQRNLISQSAETFRKWPESDSQNISQTSSSSVQTIQNYDVCQVQWPASTYNFQNEQSIVTTMSNQQEKIETLQEFTVIPNDEVSQFTEYTDQNNINNSVNTTQQYNLTINSFNTPDGIVKVQSLIQNNTNRDFKEIETNNSKQYINTNTCKHCGVYFARVQALVSHEKTHKEWINPVECQYCERQFQDGNHLATHQTTCAKKIIQNKDKNGSNNKLACKLICKHACSECGKKFPTKQKMYRHKWIHRKKTYSCEVCGLQFEKQSELDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFQCDTCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKSFRDGGTLRKHERIHTGERPHVCPICARAFNQKVVLREHVRWVHAAGKNETEKSGPPYPCPLCGSLNQDRDELCAHIVKHSDQMIAEAKAKNVNISPKIKPTKKKAKTSSCGIDVQTKEDTLENLISKTDQAKAILSITDTSDNPDDLNVMDEKQNNAFVVVTTDKRSDGFISISELKHSNIEFIVESKEDENIHVLQMDRNPRDPLSIITMGKQNNTAHIVSTVSVDSALDETIGSNNMSAMQLIQSSKQNNTLNIISKQNESLPVLTIPNPQNHDNYSSQIIQVNTANMPIDIVTQEENHTQNEQNSLIQEETSHVIQVSYQDDSDGEDFICGICAEGFDDKESLKTHIKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01269234; iTF_01267029; iTF_01270688; iTF_01271402; iTF_01269978; iTF_01267746;
- 90% Identity
- iTF_01270688;
- 80% Identity
- -