Pfla010886.1
Basic Information
- Insect
- Pseudomyrmex flavicornis
- Gene Symbol
- -
- Assembly
- GCA_014825475.1
- Location
- QVNW01000674.1:90442-93255[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.1 5.4e+02 1.8 0.2 3 21 122 139 120 140 0.83 2 14 0.00057 0.061 14.2 1.5 2 20 147 165 146 168 0.94 3 14 0.00032 0.035 15.0 1.1 1 23 174 197 174 197 0.94 4 14 5.9e-05 0.0063 17.3 0.4 1 23 203 225 203 225 0.99 5 14 0.0027 0.29 12.0 0.8 2 23 386 407 386 407 0.98 6 14 0.04 4.3 8.4 0.4 2 21 415 434 414 435 0.93 7 14 0.0026 0.28 12.1 1.8 1 19 461 479 461 483 0.91 8 14 0.0017 0.18 12.7 0.1 1 23 488 511 488 511 0.96 9 14 1.3e-06 0.00014 22.5 0.3 1 23 517 539 517 539 0.98 10 14 0.00015 0.016 16.0 2.2 1 23 546 568 546 568 0.99 11 14 0.00018 0.019 15.8 0.7 3 23 576 596 574 596 0.97 12 14 0.00062 0.066 14.1 0.1 1 23 602 625 602 625 0.96 13 14 0.51 54 4.9 0.1 1 23 639 661 639 661 0.93 14 14 0.00013 0.014 16.2 0.1 1 23 914 936 914 936 0.97
Sequence Information
- Coding Sequence
- ATGGAGACTCATGAGAGCGAGCAGTATGTGACATTTTCTCTTGATGGTGTACATGATACCGTACAAGAGAACATAATATCTCATGAAGAAATATGCGAACCCGTTGAATGTGTTCTCCAGGATGAACTTACAGAAGTCTCAGTTAATAATACTGTCAATACTGACATGGAGACACAGGAGGATGCTGACAAGATTCTTAGAGAACAGTCGGATGAGGAAGATGACAATACAGTAGAGTATCCAATATACATTAAGGAAGAGGAACAACAGCAGTATATGTCAGGTGATGATGAGTCCATGGCTGTGGAAGCTTTGCGCCAGTTAGGTGGTATGTATCCAAGCTTTGAAGGTAAAAAAATCAATTGCCCAACTTGTAAGAATCTTTTTACCCAAGAGGAAATGGTTAAACATCGGTCTACATGTACAGAATCAAAGCTGTCCTGCACTACTTGTGGAGAAAAATTTGAGAGAAAGATTGACCTAAATAACCATATGGTTTGCCATCAAGTGGATCGTCCACATGCCTGCAGAACATGTGGTAATTTATTTCGTTCCAAGAGCAGTCTGAATGCTCACATGTTGCAAGCACATCAGGTTGAACGGCCATACAAGTGTACTATCTGCGGATCTGACTTTTTAAGGCCTTCTAGTTTATCCAATCACATGAAGATTCACACATATGTCCCGGGACGAGGTATCGCGCAATCACAGAGGAATCTTATGTCTCAGTCAGCGGAAGCATTTAGGAAATGGCCAGAAAATACATCAGATTCACAGAATATATCACAGACGTCATCTTCATCTGTGCAAACTATTCATAATTACGATGTATGTCAAGTTCAATGGCCTGCGTCAACATATAATTTCCAGAATGAGCAATCAATAGTCACAACGATGTCGAATCAACAAGAAAAAATAGAAACGTTACAGGAATTTACGGTAATTCCCAACGATGAGGTATCACATTTTACCGAGTACACTGACCAAAATAATATTAACAATTCAGTTAATATTACTCAACAGTACAATTTAACAATAAATTCATTTAATACTCCCGATGGTATAGTTAAAGTACAGTCAATTATACAAAATAACACGAATAGAGATTTTAAAGAAATCGAAACAAACAATAGCAAACAATATATAAACACAAACACATGTAAACATTGTGGAGTCTACTTCGCACGTATACAAGCATTGGTATCGCACGAGAAGACTCATAAAGAATGGATCAATCCAGTTGAATGCCAGTACTGCGAAAGACAGTTTCAAGACGGGAATCATCTGGCTACTCATCAGACTACTTGTGCTAAGAAGATAATCCAAAACAAGGACAAAAACGGATCCAACAACAAGTTAGCGTGTAAACTGATATGCAAACACGCTTGCTCGGAATGTGGAAAGAAATTTCCAACTAAACAGAAGATGTATCGTCACAAATGGATTCATCGAAAGAAAACTTACTCATGTGAAGTGTGCGGTTTGCAGTTCGAGAAGCAGAACGAATTAGACGAACATAGGCTGTCGGCGCATCCGGGAGATTCGCCATTTACTTGCACGGAATGTGGGAAAAGTTTCGTGTCGCGACAAGGTCTTTGGGAACACGGTAGAACGCACGCCGGAAGCCCGGCGCATTTTCAATGTGACACCTGTTCGAAGACATTTTCATCTCGCCAGGGATATTTAATACATAATCGCACGCATACCGGCGAACGACCATACGGTTGCAAGTTTTGTTGGAAATCCTTTCGAGACGGCGGAACTCTACGGAAACACGAACGGATTCATACAGGTGAGAGACCTCACGTGTGTCCAATATGCGCGAGAGCCTTTAATCAAAAGGTAGTTTTGCGCGAGCATGTTCGATGGGTTCACGCCGCAGGAAAGAATGAGACAGAAAAAAGCGGTCCTCCGTATCCCTGTCCACTTTGCGGTGCTCTGAATCAGGACCGCGATGAGCTTTGTGCACACATTGTCAAGCATTCAGACCAAATGATCGCCGAAGCTAAAGCGAAAAACGTTAACATTTCTCCGAAGATAAAGCCAACGAAGAAAAAGGCGAAGACGTCTTCTTGTGGCATCGACGTACAGACGAAAGAAGACACGTTGGAGAATCTTATTTCGAAAACAGATCAAGCCAAAGCCATATTATCCATTACGGACACGTCTGATAATCCGGATGATTTGAACGTTATGGACGAAAAACAAAATAATGCCTTCGTCGTGGTTACCACAGATAAACGCAGCGACGGTTTTATATCAATATCCGAGCTCAAGCACAGCAACATAGAATTTATCGTGGAGAGCAAAGAAGATGAGAACATTCATGTACTTCAAATGGATGGAAATCCCAGAGATCCTTTAAGTATAATTACCATGGGCAAGCAAAACAACACGGCGCACATTGTGTCAACGGTGTCCGTCGACAGCGCTCTCGATGAAACCATCAGGTCGAACAATATGTCCGCGATGCAGTTGATTCAGTCTTCTAAGCAGAACAACACTTTAAACATAATATCGAAGCAGAACGAATCGTTACCCGTTTTAACGATTCCTAATCCTCAAAATCACGATAATTACTCCAGTCAGATCATACAAGTAAACACTGCAAACATGCCTATAGATATAGTAACACAAGATGAGGAAAATCATACCCAGAATAAACAAGACTCTTTAATACAAGAAGAAACATCTCATGTTATTCAAGTATCTTATCAGGATGACAGTGACGGAGAGGACTTTATATGTGGAATATGTGCAGAAGGATTTGATGATAAAGAGTCGTTAAAGACCCACATTAAGATTCATATATAA
- Protein Sequence
- METHESEQYVTFSLDGVHDTVQENIISHEEICEPVECVLQDELTEVSVNNTVNTDMETQEDADKILREQSDEEDDNTVEYPIYIKEEEQQQYMSGDDESMAVEALRQLGGMYPSFEGKKINCPTCKNLFTQEEMVKHRSTCTESKLSCTTCGEKFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKSSLNAHMLQAHQVERPYKCTICGSDFLRPSSLSNHMKIHTYVPGRGIAQSQRNLMSQSAEAFRKWPENTSDSQNISQTSSSSVQTIHNYDVCQVQWPASTYNFQNEQSIVTTMSNQQEKIETLQEFTVIPNDEVSHFTEYTDQNNINNSVNITQQYNLTINSFNTPDGIVKVQSIIQNNTNRDFKEIETNNSKQYINTNTCKHCGVYFARIQALVSHEKTHKEWINPVECQYCERQFQDGNHLATHQTTCAKKIIQNKDKNGSNNKLACKLICKHACSECGKKFPTKQKMYRHKWIHRKKTYSCEVCGLQFEKQNELDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFQCDTCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKSFRDGGTLRKHERIHTGERPHVCPICARAFNQKVVLREHVRWVHAAGKNETEKSGPPYPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKNVNISPKIKPTKKKAKTSSCGIDVQTKEDTLENLISKTDQAKAILSITDTSDNPDDLNVMDEKQNNAFVVVTTDKRSDGFISISELKHSNIEFIVESKEDENIHVLQMDGNPRDPLSIITMGKQNNTAHIVSTVSVDSALDETIRSNNMSAMQLIQSSKQNNTLNIISKQNESLPVLTIPNPQNHDNYSSQIIQVNTANMPIDIVTQDEENHTQNKQDSLIQEETSHVIQVSYQDDSDGEDFICGICAEGFDDKESLKTHIKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01268455;
- 90% Identity
- iTF_01270688;
- 80% Identity
- -