Pfla011476.1
Basic Information
- Insect
- Pseudomyrmex flavicornis
- Gene Symbol
- -
- Assembly
- GCA_014825475.1
- Location
- QVNW01001281.1:1-9553[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.8 1.9e+02 3.2 0.4 6 20 295 309 294 311 0.93 2 9 7.9e-07 8.4e-05 23.2 2.6 1 23 568 590 568 590 0.98 3 9 2.6e-05 0.0027 18.4 2.0 1 23 596 618 596 618 0.98 4 9 1.6e-06 0.00017 22.2 0.3 2 23 627 648 627 648 0.98 5 9 5.3e-05 0.0056 17.4 0.1 3 23 656 676 654 676 0.97 6 9 1.7e-07 1.8e-05 25.3 3.0 1 23 682 704 682 704 0.98 7 9 2.9e-06 0.0003 21.4 0.7 1 23 710 732 710 732 0.98 8 9 6.3e-05 0.0067 17.2 7.3 1 23 738 760 738 760 0.98 9 9 0.00047 0.05 14.5 1.5 1 21 766 786 766 787 0.94
Sequence Information
- Coding Sequence
- GAAGTGCTGCTGGCGCACAGCAAAGCCGCCGCTCATTGCGAGCCGATTACGGTGATCCTGGCTGAGATGGAGGCGCCGGAACTCGCGGCGTTGCTCGGCTTCGTTTACACCGGAAGCGCCACGGTGCCGCGAATGCGATTAGACGCTTTTCTGCGAGCCGCCGAGACCCTGCGCATTCGGCTTCCGCCGGTGCCCATGATCGCGACGTGCGGCGAACAGGCGACCGATTGCAAACCGGAAAACATGAAGGACGTCAAGATCTGTTCAAAATATCTGCAGTGCGATCAGTATCCCTGGTACAGTCCCGGAAGACCGTCCTGCGAAAATGTTGCCGACAAGAAGAAACCCTGCACGAGAAATTTTCTGACGAACGACAACAGAAACATTCTCAGAGAGACCAGAATGTTACACGAATTCAACAATCCCGGCCCCTCGTTCAGTCCCGCTGGCAGTTCGAACGCGTGGTCACGCGTCGGTTCTCTGCATCAGGATAGAAGAATCGGCGATCATTCCGCGGAAAAGTGTTACGGCTCGATGATACTCGCTGACAGAAATCTCGCGATGGTTCCCGAATCTTCGTCCTTCGATGTGTATCATCGAGGCGTGTGTTTTCCCGCGGGAGGAGGACCGCCCGCGGAGGGATACGCCGATCCTCTGGAGAGAATCAGAACGGGATACGAAAGACTGCAGGTGGACTGTCCGATGGACAAGCCGATGAACTTTCTCGGTTCGGAGGGCGAATTTTGCGGCAGAATGCGGGGGGACGAGTGCGCCTACCAGGGCGTTGTATCGTCCTTGCAGTGCGCAGTCACTGGCCAGACGAGGTCGTTGGAGAAGTCTTCCGATTATCCCGTCACGCAGACGGCGGGCGAGGATCTCAGCTGCGGCGAAAGTTGTTGTAGGTGGAGAACCGCCCGCAGACACGTGGCCAATAGCGTCACCGCGTCGCCGTGGCGCCAAATCGTCAGGCCTCATCATTCACCGAGAACCCCGCGATCCGTCCTCGTGCCTCAACGTCACGCCGATGACGAAATTCAAAAGAAGCCCCCGGAACCGACTCGATCGACGGTAATATCGAGTCCGAAGATCCATTCTCCGGGAGCGCCGAGGAACGACGGGCTTTACGGTTTCGAGGTTCCCGCTTATGAGACGAGTTTTAACGGCGACGCCGCGAGACCGCCGCCACCGCCGCCACCGCCGCCGCCACCGCGCGAGACGATTAGCGGCAACACGATCGGTTGCGGTCCGGAAGCGAAGATCCAAGAAGTGATCTATCAATCGCCCGTCCCGTTTGCTCCCTCTAATCAGATCGCGCCGCACGCGACGAGAAACACAAACGAAGCGGCAACCCTCTCGAGTACCGGCAACGCGATTGCGTCCGCGCAATTGTTGTCCCGCAGCAACAACGATAACAACAGCGTTATCGCCAATACCGGCAGAATAACCGGCGAGTACCCGACGACGCAAACGACGACGGTGCCGCGAACACCGACGAAGCTGTCGCATCCGATCAGCAGGCTCTGCGACACGATCGAGTCCGACTCCGAGAAGAAGGAAACCTCGTCGGAAACGACGGAGAAGAAGGAGGACGAGAGAATCGCGAGGATCTTCAGCGTCAACAGCGACAGCAACAACAACAACGAGACAATCGTCGGCGCGGAAGGAGGAGCAGCTCAGCGCGGACGACCAACCGCCGATGATCACAAGTGCGATCAGTGCGGAAAGACCTTCGTCACGAGGGCGTCGCTCAAGGTGCACAGCCGCACGCACTCCGGCGAGAAGCCGTTCCGCTGCGCGGACTGCGGCAAGCAGTTCTCGCAGCTGCGCAACTACAAGTACCACCGCAGCGTCCACGAGGGCACGCGGGAGTTTGCCGCCACCTGTCCGGAATGCGGCAAGTACTTCAACGACCGCGGCTACCTGAGCTCGCACATGAAGATCCATCGGAACCGCAAGGAGTACGGGTGCGCGGAATGCGGCAAGAGCTTCAATCAGCGGGTGGCCTACAACATGCACGTGCGCATACACACGGGCGTGAAGCCGCACCAGTGCGACCAGTGCGGCAAGGCGTTCTCGCGCAAGATGCTCCTCAAGCAGCATCTGAGGACGCACTCGGGCGAGCGGCCGTACCAGTGCCAGGTCTGTCAGAAAGCGTTTGCCGACCGCTCGAACATGACCCTGCACACGAGGCTGCACTCCGGCCTGAAACCGTACCAGTGTTCCCTCTGCTCCAAGGCTTTCACTAAAAAGCACCACCTCAAGACTCATCTGAACTATCACACCGGCACCAAGCCGTACTCGTGCTCGAACTGCGGCGGCAAGTTCTCGCAGAGCAGCAACATGAGGACCCACTTCAAGAAATGCATCGTCAACAACGCCGCCGGGACCGTGATCAAGTCCGACGAGGCCGATCGCGCCGATCGCGCCGATCCTGAGAACAACGCGCCGCCGCAGATGGTCCTGACGCCGCCCAACTCGGATCAGGAGTCCAGCATCCTGACGCCGATCTCGAAGAACGTCGCTGCGACAGACGGCAACACGTAA
- Protein Sequence
- EVLLAHSKAAAHCEPITVILAEMEAPELAALLGFVYTGSATVPRMRLDAFLRAAETLRIRLPPVPMIATCGEQATDCKPENMKDVKICSKYLQCDQYPWYSPGRPSCENVADKKKPCTRNFLTNDNRNILRETRMLHEFNNPGPSFSPAGSSNAWSRVGSLHQDRRIGDHSAEKCYGSMILADRNLAMVPESSSFDVYHRGVCFPAGGGPPAEGYADPLERIRTGYERLQVDCPMDKPMNFLGSEGEFCGRMRGDECAYQGVVSSLQCAVTGQTRSLEKSSDYPVTQTAGEDLSCGESCCRWRTARRHVANSVTASPWRQIVRPHHSPRTPRSVLVPQRHADDEIQKKPPEPTRSTVISSPKIHSPGAPRNDGLYGFEVPAYETSFNGDAARPPPPPPPPPPPRETISGNTIGCGPEAKIQEVIYQSPVPFAPSNQIAPHATRNTNEAATLSSTGNAIASAQLLSRSNNDNNSVIANTGRITGEYPTTQTTTVPRTPTKLSHPISRLCDTIESDSEKKETSSETTEKKEDERIARIFSVNSDSNNNNETIVGAEGGAAQRGRPTADDHKCDQCGKTFVTRASLKVHSRTHSGEKPFRCADCGKQFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYGCAECGKSFNQRVAYNMHVRIHTGVKPHQCDQCGKAFSRKMLLKQHLRTHSGERPYQCQVCQKAFADRSNMTLHTRLHSGLKPYQCSLCSKAFTKKHHLKTHLNYHTGTKPYSCSNCGGKFSQSSNMRTHFKKCIVNNAAGTVIKSDEADRADRADPENNAPPQMVLTPPNSDQESSILTPISKNVAATDGNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01267693; iTF_01267752; iTF_01268467; iTF_01268424; iTF_01270645; iTF_01270696; iTF_01271416; iTF_01271352; iTF_01267038; iTF_01266986; iTF_01269184; iTF_01269240;
- 90% Identity
- iTF_01267693;
- 80% Identity
- -