Pcub008567.1
Basic Information
- Insect
- Pseudomyrmex cubaensis
- Gene Symbol
- ttk
- Assembly
- GCA_014825685.1
- Location
- QVOA01018494.1:12264-30999[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.9 2.1e+02 3.1 0.4 6 20 350 364 349 366 0.93 2 9 1.1e-06 0.00012 22.7 2.5 1 23 628 650 628 650 0.98 3 9 2.7e-05 0.003 18.3 2.0 1 23 656 678 656 678 0.98 4 9 1.7e-06 0.00019 22.1 0.3 2 23 687 708 687 708 0.98 5 9 5.6e-05 0.0061 17.3 0.1 3 23 716 736 714 736 0.97 6 9 1.9e-07 2e-05 25.1 3.0 1 23 742 764 742 764 0.98 7 9 3.1e-06 0.00033 21.3 0.7 1 23 770 792 770 792 0.98 8 9 6.8e-05 0.0074 17.1 7.3 1 23 798 820 798 820 0.98 9 9 0.0005 0.054 14.4 1.5 1 21 826 846 826 847 0.94
Sequence Information
- Coding Sequence
- ATGATGGGAGAGGTGATATGTGTTTCGGGGAGGGCACCGGATGTCGGCGACATCCTGAAGGAGGCCATACTGTCGCAGCGATTCGCCGATGTGACCCTGTGCTGCCCGGGAGGCCAGAGATTTCTCGCTCATCGTCTGGTCCTGTCCGCAGCGAGCCCGTATCTTCAGGAAGTGCTGCTGGCGCACAGCAAAGCCGCCGCTCATTGCGAGCCGATTACGGTGATCCTGGCTGAGATGGAGGCGCCGGAACTCGCGGCGTTGCTCGGCTTCGTTTACACCGGAAGCGCCACGGTGCCGCGAATGCGATTAGACGCTTTTCTGCGGGCCGCCGAGACCCTGCGCATACGGCTTCCGCCGGTGCCCATGATCGCGACGTGCGTCGAGCAGGCGACCGATTGCAAACCGGAAGACATGAAGGACGTCAAGGTCTGTTCCAAGTATCTGCAGTGCGATCAGTATCCCTGGTACAGTCGCGGAAGACCGTCCTGCGAAAATATCACCGACAAGAAGGAACCTTGTACGAGAAATTTTCTGACGGACGACAACAGAAACATTCTCAGAGACACCAGAATGTTACACGAATTCAACAATCCCGGTCCCTCGTTTAATCCCGCTGGTAGTTCGAACGCGTGGTCACGCGTCGGTTCTCTGCATCAGGATAGAAGAATCAACGATCATTCCGCGGAAAAGTGTTACGGCTCGATGATACTCGATGACAGAAATCTCGCGATGGCTCCCGAATCGTCGTCTTTCGATGTGTATCATCGAGGCGCGTGTCTTCCCGGAGGCGGACCGCACGCGGAGGGATACGCCGATCCTCTAGAGAGGATCAGAACGGGATACGAAAGACTGCAGGTGGACTGTCCGATGGACAAGCCGATGAATGTTCTCGGTTTGGAGGGCGAATTTTGCGGCAGGATGCGGGGGGACGAGTGCCCCTACCAGGGCGTTGTATCGTCCTTGCAGTGCGCAGTCACTGGCCGGACGAGGTCGTTCGAGAAGTCTTCCGATTATTCCGTCACGCAGACGGCGGGCGAGGATCTCAGCTGCGGCGAAAGTTGTTGTAGGTGGAGAACCGCCCGCAGACACGTGGCCAATAGCGTCACCGCGTCGCCGTGGCGCCAAATCGTCAGGCCTCATCATTCACCGAGGACTCCGCGACCCGTCCTCGTGCCCCAACGTCACGCCAATGACGAAATTCAAAAGAAGCCCCCGGAACCGACTCGATCGACGGTAATATCGATCAGTCCGAAGATCCATTCTCCGGGAGCGCCAAGAAACGACGGGCTTTACGGTTTCGAGGTTCCCGCTTACGAGACGAGTTTTAACGGCGACGCCGCCGCGAGACCGCCGCCGCCGCCGCCGCCACCGCGAGAGACGATCAGCGGCAACACGATCGATTGTGGTCCGGACGCGAAGACCCAAGAAGTGGTCTATCAATCGCCCGTTCCGTTCGCCCCCTCTAATCAGATCGCGCCGCACGCGACGAGGAGCACCAACGAAGCGGCGGCTCTCTCGAGTACCAACGCGATCGCGTCCGCGCAATTGTTGCCCGCGCAATCGTTGTCCCGCAGCAACAACGATAACAACAGCGTTATCACCAATACCGGCAGAATAACCGGCGAGTATCCGACGACGCAAACGACGACGGTGCCGCGAACGCCGACGAAGCCCGAGCTGTCGCATCCGATCAGCAGGCTCTGCGACACGATCGAATCCGACTCCGAGAAGAAGGAAACCTCGTCGGAAACGACGGAGAAAAAGGGGGACGAGAGGGTCGCGAGGATCTTCAGCGTCAACAGCGACAGCAACAACAACAACGAGACAATCGTCGGCGTTGAAGGAGGAGCAGCTCAACGCGGACGACCGGCCGCCGATGATCACAGGTGCGATCAGTGCGGAAAGACCTTCGTCACGAGGGCGTCGCTCAAGGTGCACAGCCGCACGCACTCCGGCGAGAAGCCGTTCCGCTGCGCGGACTGCGGCAAGCAGTTCTCGCAGCTGCGCAACTACAAGTACCACCGCAGCGTCCACGAGGGCACGCGGGAGTTCGCCGCCACCTGTCCGGAATGCGGCAAGTACTTCAACGACCGCGGCTACCTGAGCTCGCACATGAAGATCCATCGGAACCGCAAGGAGTACGGGTGCGCGGAATGCGGCAAGAGCTTCAACCAGCGGGTGGCCTACAACATGCACGTACGCATACACACGGGCGTGAAGCCGCACCAGTGCGACCAGTGCGGCAAGGCGTTCTCGCGCAAGATGCTCCTCAAGCAGCATCTGAGGACGCACTCGGGCGAGCGGCCGTACCAGTGCCAGGTCTGTCAGAAAGCGTTCGCCGACCGCTCGAACATGACCCTACACACGAGGCTGCACTCCGGCCTGAAACCGTACCAGTGTTCCCTTTGCTCCAAGGCTTTCACCAAAAAGCATCACCTCAAGACTCATCTGAACTATCACACCGGCACCAAGCCGTACTCGTGTTCGAACTGCGGCGGCAAGTTCTCGCAGAGCAGCAACATGAGGACCCACTTCAAGAAGTGCATCGTCAACAACGCCGCCGGGACCGCGATCAAGTCCGACGAGGCCGATCGCGCCGATCGCGCCGATCCCGAGAACAACGCGCCGCCGCAGATGGTCCTGACGCCGCCCAACTCGGATCAGGAGTCCAGCATTCTGACGCCGATCTCGAAGAACGTCGCCGCGACAGACGGCAACACGTAA
- Protein Sequence
- MMGEVICVSGRAPDVGDILKEAILSQRFADVTLCCPGGQRFLAHRLVLSAASPYLQEVLLAHSKAAAHCEPITVILAEMEAPELAALLGFVYTGSATVPRMRLDAFLRAAETLRIRLPPVPMIATCVEQATDCKPEDMKDVKVCSKYLQCDQYPWYSRGRPSCENITDKKEPCTRNFLTDDNRNILRDTRMLHEFNNPGPSFNPAGSSNAWSRVGSLHQDRRINDHSAEKCYGSMILDDRNLAMAPESSSFDVYHRGACLPGGGPHAEGYADPLERIRTGYERLQVDCPMDKPMNVLGLEGEFCGRMRGDECPYQGVVSSLQCAVTGRTRSFEKSSDYSVTQTAGEDLSCGESCCRWRTARRHVANSVTASPWRQIVRPHHSPRTPRPVLVPQRHANDEIQKKPPEPTRSTVISISPKIHSPGAPRNDGLYGFEVPAYETSFNGDAAARPPPPPPPPRETISGNTIDCGPDAKTQEVVYQSPVPFAPSNQIAPHATRSTNEAAALSSTNAIASAQLLPAQSLSRSNNDNNSVITNTGRITGEYPTTQTTTVPRTPTKPELSHPISRLCDTIESDSEKKETSSETTEKKGDERVARIFSVNSDSNNNNETIVGVEGGAAQRGRPAADDHRCDQCGKTFVTRASLKVHSRTHSGEKPFRCADCGKQFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYGCAECGKSFNQRVAYNMHVRIHTGVKPHQCDQCGKAFSRKMLLKQHLRTHSGERPYQCQVCQKAFADRSNMTLHTRLHSGLKPYQCSLCSKAFTKKHHLKTHLNYHTGTKPYSCSNCGGKFSQSSNMRTHFKKCIVNNAAGTAIKSDEADRADRADPENNAPPQMVLTPPNSDQESSILTPISKNVAATDGNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01269985;
- 90% Identity
- iTF_01267693;
- 80% Identity
- iTF_01267693;