Basic Information

Insect: Pseudomyrmex elongatus
Gene Symbol: ttk
Assembly: GCA_014825605.1
Location: QVNY01010236.1:5603-24330[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.1 4.4e+02 3.1 0.4 6 20 350 364 349 366 0.93

2 9 1.2e-06 0.00026 22.7 2.5 1 23 624 646 624 646 0.98

3 9 3e-05 0.0062 18.3 2.0 1 23 652 674 652 674 0.98

4 9 1.9e-06 0.00039 22.1 0.3 2 23 683 704 683 704 0.98

5 9 6.3e-05 0.013 17.3 0.1 3 23 712 732 710 732 0.97

6 9 2.1e-07 4.2e-05 25.2 3.0 1 23 738 760 738 760 0.98

7 9 3.4e-06 0.0007 21.3 0.7 1 23 766 788 766 788 0.98

8 9 7.6e-05 0.015 17.1 7.3 1 23 794 816 794 816 0.98

9 9 0.00055 0.11 14.4 1.5 1 21 822 842 822 843 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.1	4.4e+02	3.1	0.4	6	20	350	364	349	366	0.93
2	9	1.2e-06	0.00026	22.7	2.5	1	23	624	646	624	646	0.98
3	9	3e-05	0.0062	18.3	2.0	1	23	652	674	652	674	0.98
4	9	1.9e-06	0.00039	22.1	0.3	2	23	683	704	683	704	0.98
5	9	6.3e-05	0.013	17.3	0.1	3	23	712	732	710	732	0.97
6	9	2.1e-07	4.2e-05	25.2	3.0	1	23	738	760	738	760	0.98
7	9	3.4e-06	0.0007	21.3	0.7	1	23	766	788	766	788	0.98
8	9	7.6e-05	0.015	17.1	7.3	1	23	794	816	794	816	0.98
9	9	0.00055	0.11	14.4	1.5	1	21	822	842	822	843	0.94

Sequence Information

Coding Sequence: ATGATGGGAGAGGTGATATGTGTTTCGGGGAGGGCACCGGATGTCGGCGACATCCTGAAGGAGGCCATACTGTCGCAGCGATTCGCCGATGTGACCCTGTGCTGCCCGGGAGGCCAGAGATTTCTCGCTCATCGTCTGGTCCTGTCCGCAGCGAGCCCGTATCTTCAGGAAGTGCTGCTGGCGCACAGCAAAGCCGCCGCTCATTGCGAGCCGATTACGGTGATCCTGGCTGAGATGGAGGCGCCGGAACTCGCGGCGTTGCTCGGCTTTGTTTACACCGGAAGCGCCACGGTGCCGCGAATGCGATTAGACGCTTTTCTGCGGGCCGCCGAGACCCTGCGCATACGGCTTCCGCCGGTGCCCATGATCGCGACGTGCGTCGAGCAGGCGACCGATTGCAAACCGGAAGACATGAAGGACGTCAAGGTCTGTTCCAAGTATCTGCAGTGCGATCAGTATCCCTGGTACAGTCGCGGAAGACCGTCCTGCGAAAATATCACCGATAAGAAGGAACCTTGTACGAGAAATTTTCTGACGGACGACAACAGAAACATTCTCAGAGACACCAGAATGTTACACGAATTCAACAATCCCGGTCCTTCGTTTAGTCCCGCTGGTAGTTCGAACGCGTGGTCACGCGTCGGTTCTCTGCATCAGGATAGAAGAATCAACGATCATTCCGCGGAAAAGTGTTACGGCTCGATGATACTCGCTGACAGAAATCTCGCGATGGCTCCTGAATCGTCGTCCTTCGATGTGTATCATCGAGGCGCGTGTCTTCCCGGAGGCGGACCGCACGCGGAGGGATACGCCGATCCTCTAGAGAGGATCAGAACGGGATACGAAAGACTGCAGGTGGACTGTCCGATGGACAAGCCGATGAACGTTCTCGGTTTGGAGAGCGAATTTTGCGGCAGGATGCGGGGGGACGAGTGCCCCTACCAGGGTGTTGTATCGTCCTTGCAGTGCGCAGTCACTGGCCGGACGAGGTCGTTCGAGAAGTCTTCCGATTATTCCGTCACGCAGACGGCGGGCGAGGATCTCAGCTGCGGCGAAAGTTGTTGTAGGTGGAGAACCGCCCGCAGACACGTGGCCAATAGCGTCACCGCGTCGCCGTGGCGCCAAATCGTCAGGCCTCATCATTCACCGAGGACTCCGCGACCCGTCCTCGTGCCCCAACGTCACGCCGATGACGAAATTCAAAAGAAGCCCCCGGAACCGACTCGATCGACGGTAATATCGATCAGTCCGAAGATCCATTCTCCGGGAGCGCCAAGAAACGACGGGCTTTACGGTTTCGAAGTTCCCGCTTACGAGACGAGTTTTAACGGCGACACCGCCGCGAGACCGCCGCCGCCGCCGCCGCCAACGCGAGAGACGATCAGCGGCAACACGATCGGTTGTGGTCCGGACGCGAAGACCCAAGAAGTGGTCTATCAATCGCCCGTTCCGTTTGCTCCCTCTAATCAGATCGCGCCGCACGCGACGAGGAGCACCAACGAAGCGGCGGCTCTCTCGAGTACCGGCAACGCGATCGCGTCCGCGCAATTGTTGCCCCGCAGCAACAACGATAACAACAGCGTTATCACCAATACCGGCAGAATAACCGGCGAGTATCCGACGACGCAAACGACGACGGTGCCGCGAACGCCGACGAAACCCGAACTGTCGCATCCGATCAGCAGGCTCTGCGACACGATCGAATCCGACTCCGAGAAGAAGGAAACCTCGTCGGAAACGACGGAGAAGAAGGGGGACGAGAGGGTCGCGAGGATCTTCAGCGTCAACAGCGACAGCAACAACAACAACGAGACAATCGTCGGCGTTGAAGGAGGAGCAGCTCAACGCGGACGACCGGCCGCCGATGATCACAGGTGCGATCAGTGCGGAAAGACCTTCGTCACGAGGGCGTCGCTCAAGGTGCACAGCCGCACACACTCCGGCGAGAAGCCGTTCCGCTGCGCGGACTGCGGCAAGCAGTTCTCGCAGCTGCGCAACTACAAGTACCACCGCAGCGTCCACGAGGGCACGCGGGAGTTCGCCGCCACCTGTCCGGAATGCGGCAAGTACTTCAACGACCGCGGCTACCTGAGCTCGCACATGAAGATCCATCGGAACCGCAAGGAGTACGGGTGCGCGGAATGCGGCAAGAGCTTCAACCAGCGGGTGGCCTACAACATGCACGTACGCATACATACGGGCGTGAAGCCGCACCAGTGCGACCAGTGCGGCAAGGCGTTCTCGCGCAAGATGCTCCTCAAGCAGCATCTGAGGACGCACTCGGGCGAGCGGCCGTACCAGTGCCAGGTCTGTCAGAAAGCGTTCGCCGACCGCTCGAACATGACCCTGCACACGAGGCTGCACTCCGGCCTGAAACCGTACCAGTGTTCCCTCTGCTCCAAGGCTTTCACCAAAAAGCACCATCTCAAGACTCATCTGAACTATCACACCGGCACCAAGCCATACTCGTGCTCGAACTGCGGTGGCAAGTTCTCGCAGAGCAGCAACATGAGGACCCACTTCAAGAAGTGCATCGTCAACAACGCCGCCGGGACCGCGATCAAGTCCGACGAGGCCGATCGCGCCGATCGCGCCGATCCCGAGAACAACGCGCCGCCGCAGATGGTCCTGACGCCGCCCAACTCGGATCAGGAGTCCAGCATCCTGACGCCGATCTCGAAGAACGTCGCCGCGACAGACGGCAACACGTAA
Protein Sequence: MMGEVICVSGRAPDVGDILKEAILSQRFADVTLCCPGGQRFLAHRLVLSAASPYLQEVLLAHSKAAAHCEPITVILAEMEAPELAALLGFVYTGSATVPRMRLDAFLRAAETLRIRLPPVPMIATCVEQATDCKPEDMKDVKVCSKYLQCDQYPWYSRGRPSCENITDKKEPCTRNFLTDDNRNILRDTRMLHEFNNPGPSFSPAGSSNAWSRVGSLHQDRRINDHSAEKCYGSMILADRNLAMAPESSSFDVYHRGACLPGGGPHAEGYADPLERIRTGYERLQVDCPMDKPMNVLGLESEFCGRMRGDECPYQGVVSSLQCAVTGRTRSFEKSSDYSVTQTAGEDLSCGESCCRWRTARRHVANSVTASPWRQIVRPHHSPRTPRPVLVPQRHADDEIQKKPPEPTRSTVISISPKIHSPGAPRNDGLYGFEVPAYETSFNGDTAARPPPPPPPTRETISGNTIGCGPDAKTQEVVYQSPVPFAPSNQIAPHATRSTNEAAALSSTGNAIASAQLLPRSNNDNNSVITNTGRITGEYPTTQTTTVPRTPTKPELSHPISRLCDTIESDSEKKETSSETTEKKGDERVARIFSVNSDSNNNNETIVGVEGGAAQRGRPAADDHRCDQCGKTFVTRASLKVHSRTHSGEKPFRCADCGKQFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYGCAECGKSFNQRVAYNMHVRIHTGVKPHQCDQCGKAFSRKMLLKQHLRTHSGERPYQCQVCQKAFADRSNMTLHTRLHSGLKPYQCSLCSKAFTKKHHLKTHLNYHTGTKPYSCSNCGGKFSQSSNMRTHFKKCIVNNAAGTAIKSDEADRADRADPENNAPPQMVLTPPNSDQESSILTPISKNVAATDGNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01269985;
90% Identity: iTF_01267693;
80% Identity: iTF_01269184;