Basic Information

Insect: Pseudomyrmex pallidus
Gene Symbol: ttk
Assembly: GCA_014825455.1
Location: QVNV01019339.1:5439-24080[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.48 46 5.0 0.5 6 20 350 364 349 366 0.94

2 9 1.1e-06 0.00011 22.7 2.5 1 23 620 642 620 642 0.98

3 9 2.8e-05 0.0027 18.3 2.0 1 23 648 670 648 670 0.98

4 9 1.7e-06 0.00017 22.1 0.3 2 23 679 700 679 700 0.98

5 9 5.7e-05 0.0055 17.4 0.1 3 23 708 728 706 728 0.97

6 9 1.9e-07 1.8e-05 25.2 3.0 1 23 734 756 734 756 0.98

7 9 3.1e-06 0.0003 21.3 0.7 1 23 762 784 762 784 0.98

8 9 6.9e-05 0.0067 17.1 7.3 1 23 790 812 790 812 0.98

9 9 0.0005 0.049 14.4 1.5 1 21 818 838 818 839 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.48	46	5.0	0.5	6	20	350	364	349	366	0.94
2	9	1.1e-06	0.00011	22.7	2.5	1	23	620	642	620	642	0.98
3	9	2.8e-05	0.0027	18.3	2.0	1	23	648	670	648	670	0.98
4	9	1.7e-06	0.00017	22.1	0.3	2	23	679	700	679	700	0.98
5	9	5.7e-05	0.0055	17.4	0.1	3	23	708	728	706	728	0.97
6	9	1.9e-07	1.8e-05	25.2	3.0	1	23	734	756	734	756	0.98
7	9	3.1e-06	0.0003	21.3	0.7	1	23	762	784	762	784	0.98
8	9	6.9e-05	0.0067	17.1	7.3	1	23	790	812	790	812	0.98
9	9	0.0005	0.049	14.4	1.5	1	21	818	838	818	839	0.94

Sequence Information

Coding Sequence: ATGATGGGAGAGGTGATACGTGTTTCGGGGAGGGCACCGGATGTCGGCGACATCCTGAAGGAGGCCATACTGTCGCAGCGATTCGCCGATGTGACTCTGTGCTGCCCGGGAGGCCAGAGATTTCTCGCTCATCGTCTGGTCCTGTCCGCAGCGAGCCCGTATCTTCAGGAAGTGCTGCTGGCGCACAGCAAAGCCGCCGCTCATTGCGAGCCGATTACGGTGATCCTGGCTGAGATGGAGGCGCCCGAACTCGCGGCGTTGCTCGGCTTCGTTTACACCGGAAGCGCCACGGTGCCGCGAATGCGATTAGACGCTTTTCTGCGGGCCGCCGAGACCTTGCGCATCCGGCTTCCGCCGGTGCCCATGATCGCGACGTGCGGCGAGCAGGCGACCGATTGCAAACCGGAAGACATGAAGGACGTCAAGGTCTGTTCAAAGTATCTGCAGTGCGATCAGTATCCCTGGTACAGTCCCGGAAGACCGTCCTGCGAAAATGCCGCCGACAAGAACGAACTCTGTACGAGAAATCTTCTGACGGACGACAACAGAAACATTCTCAGAGATACCAGAATGTTACACGAATTCAACAATCCCGGCCCCTCGTTCAGTCTCGCTGGCAGTTCGAACGCGTGGTCACGCGTCGGTTCTCTGCACCAGGATAGAAGAATCGGCGATCATTCCGCGGAAAAGTGTTACGACTCGATGATACTCGCTGACAGAAATCTCGCGATGGCTCCCGAATCGTCGTCCTTGGATGTGTATCATCGAGGCGCGTGTCTTCCCGGAGGAGGACCGCCCGCGGAGGGATACGCCGATCCTCTGGAGAGGATCAGAACGGGATACGAAAGACTGCAGGTGGACTGTCCGATGGACAAGTCAATGAACTTTCTCGGTTCGGAGGGCGAATTTTGCGGCAGGATGCGGGGGGACGAGTGCGCCTACCAAGGCGTTATATCGTCCTTGCAGTGCGCAGTCACTGGCCGGACGAGGTCGTTTGAGAAGTCTTCCGATTATTCCGTGACGCAGACGGCGGGCGAGGATCTCAGCTGCGGCGAAAGTTGTTGTAGGTGGAGAAACGCCCGCAGACACGTGGCCAATAGCGTCACCGCGTCGCCGTGGCGCCAAATCGTCAGGCCTCATCATTCACCGAGGACCCCGCGACCCGTCCTCGTGCCCCAACGTCACGCCGATGACGAAATTCAAAAGAAGCCCCCGGAACCGACTCGATCGACGGTAATATCGATCAGTCCAAAGATCCATTCTCCGGGAGCGCCGAGAAACGAGGGACTTTACGGTTTCGAGGTTCCCGCTTACGAGACGAGTTTTAACGGCGACGCCGCGAGACCGCCGCCGCCGCCACCGCGAGAGACGATCAGCGGCAACACGATCGGTCCGGACGCGAAGATCCAAGAAGTGGTCTATCAATCGCCCGTCCCGTTCGCTCCCTCTAATCAGATCGCGCCGCACGCGACGAGGAGCACCAACGAAGCGGCAGCTCTCTCGAGTACCGCGAGCAACGCGATTGCGTCCGCGCAATTGTTGCCCCGCAGCAACAACGATAACAACAGCGTTATCGCCAATACCGGCAGAATAACCGGCGAGTACCCGACAACGCAAACGACGACGGTGCCGCGAACGCCGACGAAGCCCGAGCTGTCGCATCCGATCAGCAGGCTCTGCGACACGATCGAGTCCGACTCCGAGAAGAAGGAAACCTCGTCGGAAACGACGGAGAAGAAGGAGGACGAAAGGGTCGCGAGGATCTTCAGCGTCAACAGCGACAGCAACAACAACAACGAGACAATCGTCGGCGCGGAAGGAGGAGCAGCTCAGCGCGGACGACCAACCGCCGATGATCACAGGTGCGATCAGTGTGGAAAGACCTTCGTCACGAGGGCGTCGCTCAAGGTGCACAGCCGCACGCACTCCGGCGAGAAGCCGTTCCGCTGCGCGGACTGCGGCAAGCAGTTCTCGCAGCTGCGCAACTACAAGTACCACCGCAGCGTCCACGAGGGCACGCGGGAGTTCGCCGCCACCTGTCCGGAATGCGGCAAGTACTTCAACGATCGCGGCTACCTGAGCTCGCACATGAAGATCCATCGGAACCGCAAGGAGTACGGATGCGCGGAATGCGGCAAGAGCTTCAACCAGCGGGTGGCCTACAACATGCACGTGCGCATACACACGGGCGTAAAGCCGCACCAGTGCGACCAGTGCGGCAAGGCGTTCTCGCGCAAGATGCTCCTCAAGCAGCATCTGAGGACGCACTCGGGCGAGCGCCCGTATCAGTGCCAGGTCTGTCAGAAAGCGTTTGCCGACCGTTCTAACATGACCCTGCACACGAGGCTGCACTCCGGCCTGAAACCGTACCAGTGTTCCCTCTGCTCCAAGGCTTTCACTAAAAAGCACCACCTCAAGACTCATCTGAACTATCACACCGGCACCAAGCCGTACTCGTGCTCGAACTGCGGCGGCAAGTTCTCGCAGAGCAGCAACATGAGGACCCACTTCAAGAAGTGCATCGTCAACAACGTCGCCGGGACCGCGATCAAATCCGACGAGGCCGACCGCGCCGATCCCGAGAACAACGCGACGCCGCAGATGGTTCTGACGCCGCCCAACTCGGATCAGGAGTCCAGCATCCTGACGCCGATCTCGAAGAACGTCGCCGCAACAGACGGCAACACGTAA
Protein Sequence: MMGEVIRVSGRAPDVGDILKEAILSQRFADVTLCCPGGQRFLAHRLVLSAASPYLQEVLLAHSKAAAHCEPITVILAEMEAPELAALLGFVYTGSATVPRMRLDAFLRAAETLRIRLPPVPMIATCGEQATDCKPEDMKDVKVCSKYLQCDQYPWYSPGRPSCENAADKNELCTRNLLTDDNRNILRDTRMLHEFNNPGPSFSLAGSSNAWSRVGSLHQDRRIGDHSAEKCYDSMILADRNLAMAPESSSLDVYHRGACLPGGGPPAEGYADPLERIRTGYERLQVDCPMDKSMNFLGSEGEFCGRMRGDECAYQGVISSLQCAVTGRTRSFEKSSDYSVTQTAGEDLSCGESCCRWRNARRHVANSVTASPWRQIVRPHHSPRTPRPVLVPQRHADDEIQKKPPEPTRSTVISISPKIHSPGAPRNEGLYGFEVPAYETSFNGDAARPPPPPPRETISGNTIGPDAKIQEVVYQSPVPFAPSNQIAPHATRSTNEAAALSSTASNAIASAQLLPRSNNDNNSVIANTGRITGEYPTTQTTTVPRTPTKPELSHPISRLCDTIESDSEKKETSSETTEKKEDERVARIFSVNSDSNNNNETIVGAEGGAAQRGRPTADDHRCDQCGKTFVTRASLKVHSRTHSGEKPFRCADCGKQFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYGCAECGKSFNQRVAYNMHVRIHTGVKPHQCDQCGKAFSRKMLLKQHLRTHSGERPYQCQVCQKAFADRSNMTLHTRLHSGLKPYQCSLCSKAFTKKHHLKTHLNYHTGTKPYSCSNCGGKFSQSSNMRTHFKKCIVNNVAGTAIKSDEADRADPENNATPQMVLTPPNSDQESSILTPISKNVAATDGNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01269985;
90% Identity: iTF_01267693;
80% Identity: iTF_01271352;