Basic Information

Insect: Pseudomyrmex elongatus
Gene Symbol: RREB1_1
Assembly: GCA_014825605.1
Location: QVNY01010175.1:5972-11911[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.5e-05 0.0093 17.8 1.2 1 23 44 66 44 66 0.97

2 14 5.9e-05 0.012 17.4 0.1 1 23 81 103 81 103 0.98

3 14 0.011 2.2 10.3 0.3 1 23 229 252 229 252 0.96

4 14 0.027 5.5 9.1 2.0 2 23 258 280 258 280 0.96

5 14 0.11 22 7.2 0.1 1 23 506 528 506 528 0.96

6 14 2.2e-05 0.0046 18.8 0.2 1 23 537 559 537 559 0.98

7 14 0.0012 0.24 13.3 2.7 1 23 565 588 565 588 0.96

8 14 0.0007 0.14 14.1 2.9 1 23 960 983 960 983 0.96

9 14 0.00073 0.15 14.0 0.1 3 23 1246 1266 1244 1266 0.97

10 14 0.91 1.9e+02 4.3 12.4 1 23 1272 1295 1272 1295 0.97

11 14 0.0061 1.2 11.1 2.3 1 23 1339 1363 1339 1363 0.97

12 14 6.3 1.3e+03 1.6 2.7 1 23 1441 1463 1441 1464 0.94

13 14 0.011 2.3 10.2 0.4 2 23 1517 1538 1516 1538 0.94

14 14 0.0025 0.52 12.3 5.1 1 23 1544 1566 1544 1566 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.5e-05	0.0093	17.8	1.2	1	23	44	66	44	66	0.97
2	14	5.9e-05	0.012	17.4	0.1	1	23	81	103	81	103	0.98
3	14	0.011	2.2	10.3	0.3	1	23	229	252	229	252	0.96
4	14	0.027	5.5	9.1	2.0	2	23	258	280	258	280	0.96
5	14	0.11	22	7.2	0.1	1	23	506	528	506	528	0.96
6	14	2.2e-05	0.0046	18.8	0.2	1	23	537	559	537	559	0.98
7	14	0.0012	0.24	13.3	2.7	1	23	565	588	565	588	0.96
8	14	0.0007	0.14	14.1	2.9	1	23	960	983	960	983	0.96
9	14	0.00073	0.15	14.0	0.1	3	23	1246	1266	1244	1266	0.97
10	14	0.91	1.9e+02	4.3	12.4	1	23	1272	1295	1272	1295	0.97
11	14	0.0061	1.2	11.1	2.3	1	23	1339	1363	1339	1363	0.97
12	14	6.3	1.3e+03	1.6	2.7	1	23	1441	1463	1441	1464	0.94
13	14	0.011	2.3	10.2	0.4	2	23	1517	1538	1516	1538	0.94
14	14	0.0025	0.52	12.3	5.1	1	23	1544	1566	1544	1566	0.98

Sequence Information

Coding Sequence: ATGTCGACCGCAATAAATTCATTTAGAATGACGGAATCTGAGAATGAATCTGATCAGAAGCAAGAAAACGAAGCACAAATCGATGCCGCTTCGCCATCATCAAGCGTCGAGCTGTCGGAGAACAGTACGCATCCGTGCCCGAATTGCCCGTCGGTGTTCTCCAGCTCTCATGAGTTGACCAATCACTTGCGCGGCCACAACTCACCGCGTAGCACGGACTGCAGCGGCGAGGAGCTCGACTACAGCTGCAACGTTTGTAACAAAGTGCTCAGCTCGGCGAGTTCGCTGGACCGTCACGTACTGGTACACTCGGGCGAGCGGTCGTTCAAGTCCAAGCACTGCAACAACACGACGACGTACAATACAACGAACGGCAACATGAACCGACACGCGAGAAACGCGCATCGTCTGGTATCGTCGAACAGTTGCACAGATTCCGAAGGTAGCAGCAGCTCGGAGAGGCCGGCGATAACGAACCAGGACGAGTACAACAATAACGAGATCGCCAGGCGTAACTCGCCGGATCTGATCGACGATCGACACGACGAACCGTCGCCCAGCGATCGTGAGAGCAAACAGAAATGTTCGGACGACAGCAGCGACACGGAGGAGCAGAGGAGTCACAAGATTCTCATGAACTCTCGGATGATGATGAGGTGTCGACCGGAAGAAGAGCAAAAGACTTTCAGCTGCTCTACTTGCGGACAAAACTTCATGACAAGCGCGATATTGGAGTCTCACATGGACCGCATGCATCCGGACATTTTGCCGAAATGCGAGACCTGCAATCTGTCCTTCAAGAATTATCGTGTACTGAACCTCCATCGTTCCATGAAACATTACAAGAAGCACACCGACGGCAACAACAGCCGGAATCTGCGCAACACCGTGGACGGCTTCAAAGATCTGACGTTCATCGACTTCTCGTCCGACAAGTTTCCGACGATTGCCCGGGCGGTGTGCGAGCGGGAGCTGCACCGACCGGCTTCCGGCGAAGTCAACAGGTTTCAATGCATGAAGTGTTTGCACGCGTTTCCGTGCAAACAAGCCCAGCTGGCGCACGAGAAGGAATGCAGAGGTCCGTACAAGAACAAAAGAAACGACAACAACAATAACGACAACAGTACCAATAATAATTTTGAGACAGATCTAGACGCGCCATCGGTCCAGGATGATCCCAAGACGAAACAAGAAATGTTCTTCGCCGTGCTGGATCTGCAGAACAAAGCCTCGGCGCACGAGGCGAAGGAGTTGAAAGAGTCGAAAGATCCGAAAGAAGTCAAGGATCCGAGGGATATTAAAGATCTTGCAGACATTCCAAGCATTCTGTCCGTCAGCTTGAACTGTCTGCAAACTTTTCCTCGCTCGGACGCCAGCACGCCCGAGAACACCATCAGATTCCATCCGACCGTCAGCTCCTCAGGCTCTTCTGGCACTTGCTCGTCCGAGTACAACGAAGAAGAGGCGCAGGACGCGTTCACCGCAGAATTTCGGAAGATGAAATTGAAGGGCGAGTTTCCTTGCAGATTGTGCGCAACTGTGTTTCCCAATTTGCGGGCGTTGAAGGGACACAATCGTGCGCATATGAACGTGGAGCCGGGAATGCCGTATCCGTGCAACATGTGCCCTTACACCAGCACCGATAAAGGAGCCTTGATGAAACATCTGAGATCGCACAATGGCGACCGGCCGTTCGAATGCTCCATCTGCAATTACGCATTCACTACCAAAGCGAATTGCGAGAGGCATGTGAAGAATCGTCACGGGATGATCAGCAAGGAGGAGGTCAAGAACGTGCTGATATACCATCCGAGTGAAGACTCGACGAACGACAACGTCGAGAGAAGCTCGCCCCGAGTTGTCAGGGAGGACATGCGAAAGAGTCTCGTTTATCCGAGCGAGCGCGAAGAGACTCCTCAGCAACAGCAAATTCATTATCCGCCAATACCGTTAGATTGCAATCCCGGACCGTCGAATGTTCGCGCTGAGATGCTGATGACTCGCTACGAGAAGCCGGAGATGTTCACCAGACCGACTAAGTCGCAGGCTCTCAACCTCGTGAAGAGAAACGCGCAAGAAGCGAGCGTGTCTCACGATCTAATCGCGAAGCCTAATTATCCGAAAGTTGAAGGAGTCGAGATGAAGGAGGACATCGAGTCGAGATCATCGGATAGCAGCGTGTCTCTAGTCAGTGATACCAATAAAATAGATACACACCAAAGAATTCAAGCTAGTCCGATGAACTTGACGAAACCTATTGGATTGAACTCGGGAGAGGACGGGCCGTTGGATTTGTCGATGGATGTGTTAGATTTGAGCAGAAAACGGAAGAGAGACAATGAGGATACCGACGGCCACGAAGAGAAACGATTTAAAAACAATCAATCAGATCTATACGCTACGAATCCGGCGTTGCTGCTGACTCAAGCTCTTCTCAACAGAGCTCGCGAGACTTCTCCGACGTCGCTCGAAACTTTCTACGCCAATACCCTTTATCGCAATCTCAACACGTTGACCAGCGCAAGCATGATACCACCATACTTTCTGAATTCTCATATGTTCAATCAAGACTTAGTTGCAAAAAATAGGCTACAGAAGGGATTGGTGAGAGGCCTGCAGTTAACAGGCGGTGGCACTCTTCCGGTAGATACAGCGATTCCTAGCACCAGTTACGCTTATCCGCAAACAAGAGACGTCACCACTTCGCAGGCACCGAGCGAACAGTGTTATCCAAATCTGATGGCCAGTCAGACCGCGCCAAATCGTGTAATCGAAAAACCGGACGGTATATCGTCAAATGATCCCGTTAAGATGGTGCTGAAGAATGGAGTGTTAATTCCTAAGCAGAAGCAACGCAGATACCGTACAGAAAGACCTTTCAGCTGCGATCATTGCTCGGCGAGATTCACACTGAGGAGCAATATGGAGCGCCATATTAAACAGCAGCATCCCCAGTTTTGGAGTCAAAGACCTCGCGGAGGACACTCGACCAGAGGTAGACCGCCCGCAAGTCTCATGGCGCAAAATTCGAATTCGTCGGCTTCGCAAGCTCAACCGAATATTCTCAAACTCGAACCGCCAATGGTTACATCGGATTATAACTCACATCCCATCTCGAATCAAGTAAAATACGCAATTCTGGCGCAACAATTGAAAGCTAAGATAGACGATAACGATTCGGAGGACGAGATGGTGATAGACGAGGAGGGAACAGGTGACAGAGATGTTCAGGAACCGCAAACTCAACACGAATCGGGCACGAGCTTGCTGAGAGATCAGTTGGAAAGCAGCGATGATACCAAAGACGTCGTAGTCAAGACAGAAAAAGACACCGAGTCTGCCGAGGAGAGTTTAAAAGAGTCTCGTACCGAACAGACTACTCAAAATGACGTTAACGGAGTCAACTCGGAAGAATCCGAATCTGTCGAAAAGAAACCAAGTGCCACTGAAGAGGCAAACACGAAGGAATCTACTGGAAGAGAGCAAGTCAAGCTCGAAGACGGAGCACCCGACCTCGCGAGCGTTTCGAAGCTTCTTGACAACGCGTCTCAACAATACCAACAATTTAAACCGCAGTACTTGAGCGACGAGGAAGGACCGGTGGCTTCGACTAGCGGTAACAACTCCGGTAGCGAGAAGTCCGATTCTGTGAACTCAAACTCTAATAACACTTCGTCGAACAAGAAGAAAAAGAAGAAGAAGTCCGCGTACTCGTTGGCGCCGAATCGCGTGATATGTCCCTTCTGCGAGCGTCCGTTCCCCTGGTCCTCGTCACTGAGACGCCACATCCTCACTCATACCGGTCAGAAGCCGTATCAGTGCAAACACTGCTCGCATCATTTCACCACCAAGTCCAACTGCGATCGCCATTTGTTGAGAAAGCACCGAGCGAAGGCGAATAAAACGCGCCAAGCTAGAAATTCCTCCTCGCCAGACATCCAGGTAGTTGCCAGCAGTAGTGTCTCCGCTAACACTAACAATGCGTTCTCCATGAGAAACGTGCCCGAGAGACCGTTTAAATGCAATCAGTGTCCGAGCTCGACGTTCTCCACGTTAGGCAATTTGAAGAAGCACCGATCGACCAAACATCGCAAGACTGTGTCCAGGTCGGAATCCAGCGATCAGCAAAACAGTCCGCCGCAGTGTGCCGCGCAAAACGACCAGAGCGATTACGAGAGTCCTTCGTCGAGTCAATCCGACAACTCGTTATCTGCTACCGTAAACACAAAATCGAATACCACTACGTCTCTCAATACGCTGACTGAAACCGGCAGATCGCGCAAATCGCCAAGATCGTCTCCGGGACCTGGTGACGTGCCTTTCAAGTGTTACTTATGCGACAGTGGCTTCGCAGAACGACAAGACTGTTTGGAACATATCAAAGTACATCACCGACGATCTTACGAGATGTTGAAGGCCAAAGGAGCTCTCGAAATGGCGTCTATGAACATAGACGCCGGTGAGGACCAGATGATCACCGCGCAGCAGCATCATAGCGATGGCGAAGAAAAAAAAGGACGTTTTCCGGACTATAGCAATAGAAAGGTTGTGTGCGCTTTCTGCATGAGACGATTTTGGTCCGCGGAAGATCTTCGACGTCACATGCGGACTCACACCGGCGAGAGACCTTTCGAATGCGACATTTGCAGCAGAAAGTTCACGTTGAAGCACAGCATGCTGCGCCACCGCAAGAAGCACGAATCGATGGACTCCTCCATGTACATAGGTAACAGCGGCGACGAGGAAAATTCACTCGCACAACCGCCAACGATCACACCGTCGCCGATTTCTACCAACACCAGCAGACCCCGCACCCAAGACAGAATCTCCTTACCGACCGTCGCGGCGGTTGCGACAGCGGACGCAGCACCCTGCGCATTGATGCGATATAATCATTACGATAACATGGCCACTCTCACCGGGAGAATGGCGAACGATGGATCGCAAGGTGCTGCTCCCGCCCCTTTGTCGTCCACACCACCACCTGCGGAGGCGCCCAGCGAGAGCGGAGATAACGATCTGATCTCCAACTTGCTGGGAATACGCGATAAAGGTCTGCTCGACAAGGTACTCCGTAGCTCGGCAGACGATGCGGCCAAGTTACTGGGTGTCAATCATAACGAGTGA
Protein Sequence: MSTAINSFRMTESENESDQKQENEAQIDAASPSSSVELSENSTHPCPNCPSVFSSSHELTNHLRGHNSPRSTDCSGEELDYSCNVCNKVLSSASSLDRHVLVHSGERSFKSKHCNNTTTYNTTNGNMNRHARNAHRLVSSNSCTDSEGSSSSERPAITNQDEYNNNEIARRNSPDLIDDRHDEPSPSDRESKQKCSDDSSDTEEQRSHKILMNSRMMMRCRPEEEQKTFSCSTCGQNFMTSAILESHMDRMHPDILPKCETCNLSFKNYRVLNLHRSMKHYKKHTDGNNSRNLRNTVDGFKDLTFIDFSSDKFPTIARAVCERELHRPASGEVNRFQCMKCLHAFPCKQAQLAHEKECRGPYKNKRNDNNNNDNSTNNNFETDLDAPSVQDDPKTKQEMFFAVLDLQNKASAHEAKELKESKDPKEVKDPRDIKDLADIPSILSVSLNCLQTFPRSDASTPENTIRFHPTVSSSGSSGTCSSEYNEEEAQDAFTAEFRKMKLKGEFPCRLCATVFPNLRALKGHNRAHMNVEPGMPYPCNMCPYTSTDKGALMKHLRSHNGDRPFECSICNYAFTTKANCERHVKNRHGMISKEEVKNVLIYHPSEDSTNDNVERSSPRVVREDMRKSLVYPSEREETPQQQQIHYPPIPLDCNPGPSNVRAEMLMTRYEKPEMFTRPTKSQALNLVKRNAQEASVSHDLIAKPNYPKVEGVEMKEDIESRSSDSSVSLVSDTNKIDTHQRIQASPMNLTKPIGLNSGEDGPLDLSMDVLDLSRKRKRDNEDTDGHEEKRFKNNQSDLYATNPALLLTQALLNRARETSPTSLETFYANTLYRNLNTLTSASMIPPYFLNSHMFNQDLVAKNRLQKGLVRGLQLTGGGTLPVDTAIPSTSYAYPQTRDVTTSQAPSEQCYPNLMASQTAPNRVIEKPDGISSNDPVKMVLKNGVLIPKQKQRRYRTERPFSCDHCSARFTLRSNMERHIKQQHPQFWSQRPRGGHSTRGRPPASLMAQNSNSSASQAQPNILKLEPPMVTSDYNSHPISNQVKYAILAQQLKAKIDDNDSEDEMVIDEEGTGDRDVQEPQTQHESGTSLLRDQLESSDDTKDVVVKTEKDTESAEESLKESRTEQTTQNDVNGVNSEESESVEKKPSATEEANTKESTGREQVKLEDGAPDLASVSKLLDNASQQYQQFKPQYLSDEEGPVASTSGNNSGSEKSDSVNSNSNNTSSNKKKKKKKSAYSLAPNRVICPFCERPFPWSSSLRRHILTHTGQKPYQCKHCSHHFTTKSNCDRHLLRKHRAKANKTRQARNSSSPDIQVVASSSVSANTNNAFSMRNVPERPFKCNQCPSSTFSTLGNLKKHRSTKHRKTVSRSESSDQQNSPPQCAAQNDQSDYESPSSSQSDNSLSATVNTKSNTTTSLNTLTETGRSRKSPRSSPGPGDVPFKCYLCDSGFAERQDCLEHIKVHHRRSYEMLKAKGALEMASMNIDAGEDQMITAQQHHSDGEEKKGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFECDICSRKFTLKHSMLRHRKKHESMDSSMYIGNSGDEENSLAQPPTITPSPISTNTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYDNMATLTGRMANDGSQGAAPAPLSSTPPPAEAPSESGDNDLISNLLGIRDKGLLDKVLRSSADDAAKLLGVNHNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01267792;
90% Identity: iTF_01270025; iTF_01267792; iTF_01271458; iTF_01268514; iTF_01267095; iTF_01270730;
80% Identity: -