Basic Information

Insect: Pseudomyrmex dendroicus
Gene Symbol: RREB1
Assembly: GCA_014825645.1
Location: QVNZ01026371.1:23308-33764[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.3e-05 0.0051 17.7 1.2 1 23 113 135 113 135 0.97

2 14 5.6e-05 0.0066 17.4 0.1 1 23 150 172 150 172 0.98

3 14 0.01 1.2 10.3 0.3 1 23 298 321 298 321 0.96

4 14 0.025 3 9.0 2.0 2 23 327 349 327 349 0.96

5 14 0.022 2.6 9.2 0.2 1 23 575 597 575 597 0.96

6 14 2.1e-05 0.0025 18.7 0.2 1 23 606 628 606 628 0.98

7 14 0.0011 0.13 13.3 2.7 1 23 634 657 634 657 0.96

8 14 0.00066 0.078 14.0 2.9 1 23 1028 1051 1028 1051 0.96

9 14 0.00069 0.081 13.9 0.1 3 23 1314 1334 1312 1334 0.97

10 14 0.86 1e+02 4.2 12.4 1 23 1340 1363 1340 1363 0.97

11 14 0.0058 0.68 11.0 2.3 1 23 1407 1431 1407 1431 0.97

12 14 6 7e+02 1.6 2.7 1 23 1509 1531 1509 1532 0.94

13 14 0.011 1.3 10.2 0.4 2 23 1585 1606 1584 1606 0.94

14 14 0.0024 0.28 12.2 5.1 1 23 1612 1634 1612 1634 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.3e-05	0.0051	17.7	1.2	1	23	113	135	113	135	0.97
2	14	5.6e-05	0.0066	17.4	0.1	1	23	150	172	150	172	0.98
3	14	0.01	1.2	10.3	0.3	1	23	298	321	298	321	0.96
4	14	0.025	3	9.0	2.0	2	23	327	349	327	349	0.96
5	14	0.022	2.6	9.2	0.2	1	23	575	597	575	597	0.96
6	14	2.1e-05	0.0025	18.7	0.2	1	23	606	628	606	628	0.98
7	14	0.0011	0.13	13.3	2.7	1	23	634	657	634	657	0.96
8	14	0.00066	0.078	14.0	2.9	1	23	1028	1051	1028	1051	0.96
9	14	0.00069	0.081	13.9	0.1	3	23	1314	1334	1312	1334	0.97
10	14	0.86	1e+02	4.2	12.4	1	23	1340	1363	1340	1363	0.97
11	14	0.0058	0.68	11.0	2.3	1	23	1407	1431	1407	1431	0.97
12	14	6	7e+02	1.6	2.7	1	23	1509	1531	1509	1532	0.94
13	14	0.011	1.3	10.2	0.4	2	23	1585	1606	1584	1606	0.94
14	14	0.0024	0.28	12.2	5.1	1	23	1612	1634	1612	1634	0.98

Sequence Information

Coding Sequence: ATGAGTCATCCGCGCAGGTATGCCAAGAGGGTTGCCGAGTTACGGATCGGTAAACCCAAGATTGTCAGAAAGAGATTCTCAACCAGCCAACCGCCATCTTTGTTCCTCTTGTGTGGTGCGTGGGTGTATCTGAGCGTGGAGGAAGCGGGGATGATGAGGGAGAACTGGACAAAAAGAGGGGAGGATAACGACGAGAGAAAGAGGGAGAGAAACGCCGTCAAAAGCGAGGCGGAGATGACGGAATCTGAGAATGAATCTGATCAGAAGCAAGAAAACGAAGCACAAATCGATGCCGCTTCGCCATCATCAAGCGTCGAGCTGTCGGAGAACAGCACGCATCCGTGCCCGAATTGTCCGTCGGTGTTCTCCAGCTCTCATGAGTTGACCAATCACTTGCGCGGCCACAACTCACCGCGTAGCACGGACTGCAGCGGCGAGGAGCTCGACTACAGCTGCAACGTTTGTAACAAGGTGCTCAGCTCGGCGAGTTCGCTGGACCGTCACGTACTGGTGCACTCGGGCGAGCGGTCGTTCAAGTCCAAGCACTGCAACAACACGACGACGTACAATACAACAAACGGCAACATGAACCGACACGCGAGAAACACGCATCGTCTGGTATCGTCGAACAGTTGCACAGATTCCGAAGGTAGCAGCAGCTCGGAGAGGCCGGCGATAACGAACCAGGACGAGTACAACAATAACGAGATCGCCAGGCGTAACTCGCCGGATCTGATCGACGATCGATACGACGAACCGTCGCCCAGCGATCGTGAGAGCAAACAGAAATGTTCGGACGACTGCAGCGACACAGAAGAGCAGAGGAGTCACAAGATTCTCATGAACTCTCGGATGATGATGAGGTGTCGACCGGAAGAAGAGCAAAAGACTTTCAGCTGCTCTACTTGCGGACAAAACTTCATGACAAGCGCGATATTGGAGTCTCACATGGACCGCATGCATCCGGAACTTTTGCCGAAATGCGAGACCTGCAATCTGTCCTTCAAGAATTACCGTGTACTGAATCTTCATCGTTCCATGAAACATTACAAGAAGCACACTGACGGCAACAACAGTCGGAATCTGCGCAACACTGTGGACGGCTTCAAAGATCTGACGTTCATCGACTTCTCGTCCGACAAGTTTCCGACGATTGCCCGGGCGGTGTGCGAGCGGGAGCTGCACCGACCGGCTTCCGGCGAAGTCAACAGGTTTCAATGCATGAAGTGTTTGCACGCGTTTCCGTGCAAACAAGCCCAGCTGGCACACGAGAAGGAATGCAGAGGTCCGTACAAGAACAAAAGAAACGACAACAACAATAACGACAACAGTACCAATAATAATTTTGAGACAGATCTAGACGCGCCGTCGGTCCAGGATGATGCCAAGACGAAACAAGAGATGTTTTTCGCCGTGCTGGATCTGCAGAACAAAGCCTCGGCGCACGAGGCGAAGGAGTTGAAAGAATCGAGGGATCCGAAAGAAATCAAGGAGCCGAGGGATATTAAAGATCTTGCAGACATTCCAAGCATTCTGTCCGTCAGCTTGAACTGTCTGCAAACTTTCCCTCGCTCGGACGCCAGCACGCCCGAGAACACCATCAGATTCCATCCGACCGTCAGCTCGTCAGGCTCTTCTGGCACCTGCTCGTCCGAGTACAACGAAGAAGAGGCGCAGGACGCGTTCACCGCAGAATTTCGGAAGATGAAATTGAAGGGCGAGTTTCCTTGCAGATTGTGCACAACTGTGTTTCCCAATTTGCGAGCGTTGAAGGGACACAATCGTGCGCATATGAACGTGGAGCCGGGAATGCCGTATCCGTGCAACATGTGCCCTTACACCAGCACCGATAAAGGAGCCTTGATGAAACATCTGAGATCGCACAATGGCGACCGGCCGTTCGAATGCTCCATCTGCAATTATGCATTCACCACCAAAGCGAATTGCGAGAGGCATGTGAAGAATCGTCACGGAATGATCAGCAAGGAAGAGGTCAAGAACGTGCTGATATACCATCCGAGTGAAGACTCGACGAACGATAACGTCGAGAGAAGCTCGCCCCGAGTTGTCAGGGAGGACATGCGAAAGAGTCTCGTTTATCCGAGCGAGCGCGAAGAGACTCCTCAGCAACAGCAAATTCATTATCCACCAATACCGTTAGATTGCAATCCCGGACCGTCGAATGTTCGCGCTGAAATGCTGATGACTCGCTACGAGAAGCCGGAGATGTTCACCAGACCGACTAAGTCGCAGGCTCTCAACCTCGTGAAGAGAAACGCGCAAGAAGCGAACGCGTCTCACGATTTAATCGCGAAGCCTAATTATCCAAAAGTTGAAGTCGAGATGAAGGAAGACATCGAGTCGAGATCATCGGATAGCAGCGTGTCTCTAGTCAGTGATACCAATAAAATAGATACACACCAAAGAATTCAAGCTAGTCCGATGAACTTGACGAAACCTATTGGATTGAACTCGGGAGAGGACGGGCCGTTGGATTTGTCGATGGATGTGTTAGATTTGAGCAGAAAACGGAAGAGAGACAATGAGGATGCCGACGGCCACGAAGAGAAACGATTTAAAAACAATCAATCAGATCTATACGCTACGAATCCGGCGTTGCTGCTGACTCAAGCTCTTCTCAACAGAGCTCGCGAGACTTCTCCGACGTCGCTCGAAACTTTCTACGCCAATACTCTTTATCGCAATCTCGGCACGTTGACCAGCGCAAGCATGATACCACCATACTTTCTGAATTCTCATATGTTCAATCAAGACTTAGTTGCAAAAAATAGGCTACAGAAGGGATTGGTGAGAGGCCTGCAGTTAACAGGCGGTGGCACTCTTCCGGTAGATACAGCGATTCCTAGCACCAGTTACGCTTATCCGCAAACGAGAGACGTCACCACTTCGCAGGCGCCGAGCGAACAGTGTTATCCAAATCTGATAGCCAGTCAGACCGCGCCAAATCGTGTAATCGAAAAACCGGACGGTATATCGTCAAATGATCCCGTTAAGATGGTGCTGAAGAATGGAGTGTTGATTCCTAAGCAGAAGCAACGCAGATACCGTACAGAAAGACCTTTCAGCTGCGACCATTGTTCGGCGAGATTCACACTGAGGAGCAATATGGAGCGCCATATTAAACAGCAGCATCCTCAGTTTTGGAGTCAAAGACCTCGCGGAGGACACTCGACCAGAGGTAGACCACCCGCAAATCTCATGACGCAAAATTCGAATTCGTCGGCTTCGCAAACTCAACCGAATATTCTCAAACTCGAACCGCCAATGGTTACATCGGATTATAACTCGCATCCCATCTCGAATCAAGTAAAATATGCAATTCTGGCGCAACAATTGAAAGCTAAGATAGACGATAACGATTCGGAGGACGAGATGGTGATAGACGAGGAGGGAACAGGTGATAGAGATGTTCAGGAACCTCAAACTCAGCACGAATCGGGCACGAGCTTGCTGAGAGATCAGTTGGAAAGCAGCGATGATACCAAAGACGTCATAGTCAAGACAGAAAAAGACACCGAGTCTGCCGAGGAGAGCTTAAAAGAGTCTCGTACCGAACAGACTACTCAAAATGACGTTAACGGAGTCAACTCGGAAGAATCCGAATCTGTCGAAAAGAAACCAAGTGCCACTGAAGAGGCAAACACGAAGGAATCTACTGGAAGAGAGCAAGTCAAGCTCGAAGACGGAGCACCCGACCTCGCGAGCGTTTCGAAGCTTCTTGACAACGCGTCTCAACAATACCAACAATTTAAACCGCAGTACTTGAGCGACGAAGAAGGACCGGTGGCTTCGACTAGCGGTAACAACTCCGGTAGCGAGAAGTCCGATTCTATGAACTCAAACTCTAATAACACTTCGTCGAACAAGAAGAAAAAGAAGAAGAAGTCCGCGTATTCGTTGGCGCCGAATCGCGTGATATGTCCCTTCTGCGAGCGTCCGTTCCCCTGGTCCTCGTCACTGAGACGCCACATCCTCACTCATACTGGTCAAAAGCCGTATCAGTGCAAACACTGCTCGCATCATTTCACTACCAAGTCCAACTGCGATCGCCATTTGTTGAGAAAGCACCGAGCAAAGGCGAATAAAACGCGCCAAGCTAGAAATTCCTCCTCGCCAGACATCCAGGTAGTTGCCAGCAGTAGTGTCGCCGCTAACACTAACAACGCGTTCTCCATGAGGAACGTGCCCGAGAGACCGTTTAAATGCAATCAGTGTCCGAGCTCGACGTTCTCTACGTTGGGCAATTTGAAGAAACACCGATCGACCAAACATCGCAAGACTGTGTCCAGGTCGGAATCCAGCGATCAGCAAAACAGTCCGCCGCAGTGTGCCGCGCAAAACGACCAGAGCGATTACGAGAGTCCTTCGTCGAGTCAGTCCGACAACTCGTTATCTGCTACCGTAGGCGCAAAATCGAATACCACTACGTCTCTCAATACGCTGACTGAAACCGGCAGATCGCGCAAATCGCCAAGATCGTCTCCGGGACCTGGTGACGTGCCTTTCAAGTGTTACTTATGCGACAGCGGCTTCGCAGAACGACAAGACTGTTTGGAACATATCAAAGTACATCACCGACGATCTTACGAGATGTTGAAGGCCAAAGGAGCTCTCGAAATGGCGTCTATGAACATAGACGCCGGTGAGGACCAGATGATCACCGCGCAGCAGCATCATAGCGATGGCGAAGAAAAAAAAGGACGTTTTCCGGACTATAGCAATAGAAAGGTTGTGTGCGCTTTCTGCATGAGACGATTTTGGTCCGCGGAAGATCTTCGACGTCACATGCGGACTCACACCGGCGAGAGACCTTTCGAATGCGACATTTGCAGCAGAAAGTTCACGTTGAAGCACAGCATGCTGCGCCACCGCAAGAAGCACGAATCGATGGACTCCTCCATGTACATAGGCAACAGCGGCGACGAGGAAAATTCACTCGCACAACCGCCGACAATCACACCGTCGCCGATTTCTACCAACACCAGCAGACCCCGCACCCAAGACAGAATCTCCTTACCGACCGTCGCGGCGGTTGCGACAGCGGACGCAGCGCCTTGCGCATTGATGCGATATAATCATTACGATAACATGGCCACTCTCACCGGGAGAATGGCGAACGATGGATCACAAGGTGCTGCTCCCGCCCCTTTGTCGTCCACACCACCACATGCGGAGGCGCCCAGCGAGAGCGGAGATAACGATCTGATCTCCAACTTGCTGGGAATACGCGATAAAGGTCTACTCGACAAGGTACTTCGTAGCTCGGCGGACGATGCGGCCAAGTTACTGGGTGTCAATCATAACGAGTGA
Protein Sequence: MSHPRRYAKRVAELRIGKPKIVRKRFSTSQPPSLFLLCGAWVYLSVEEAGMMRENWTKRGEDNDERKRERNAVKSEAEMTESENESDQKQENEAQIDAASPSSSVELSENSTHPCPNCPSVFSSSHELTNHLRGHNSPRSTDCSGEELDYSCNVCNKVLSSASSLDRHVLVHSGERSFKSKHCNNTTTYNTTNGNMNRHARNTHRLVSSNSCTDSEGSSSSERPAITNQDEYNNNEIARRNSPDLIDDRYDEPSPSDRESKQKCSDDCSDTEEQRSHKILMNSRMMMRCRPEEEQKTFSCSTCGQNFMTSAILESHMDRMHPELLPKCETCNLSFKNYRVLNLHRSMKHYKKHTDGNNSRNLRNTVDGFKDLTFIDFSSDKFPTIARAVCERELHRPASGEVNRFQCMKCLHAFPCKQAQLAHEKECRGPYKNKRNDNNNNDNSTNNNFETDLDAPSVQDDAKTKQEMFFAVLDLQNKASAHEAKELKESRDPKEIKEPRDIKDLADIPSILSVSLNCLQTFPRSDASTPENTIRFHPTVSSSGSSGTCSSEYNEEEAQDAFTAEFRKMKLKGEFPCRLCTTVFPNLRALKGHNRAHMNVEPGMPYPCNMCPYTSTDKGALMKHLRSHNGDRPFECSICNYAFTTKANCERHVKNRHGMISKEEVKNVLIYHPSEDSTNDNVERSSPRVVREDMRKSLVYPSEREETPQQQQIHYPPIPLDCNPGPSNVRAEMLMTRYEKPEMFTRPTKSQALNLVKRNAQEANASHDLIAKPNYPKVEVEMKEDIESRSSDSSVSLVSDTNKIDTHQRIQASPMNLTKPIGLNSGEDGPLDLSMDVLDLSRKRKRDNEDADGHEEKRFKNNQSDLYATNPALLLTQALLNRARETSPTSLETFYANTLYRNLGTLTSASMIPPYFLNSHMFNQDLVAKNRLQKGLVRGLQLTGGGTLPVDTAIPSTSYAYPQTRDVTTSQAPSEQCYPNLIASQTAPNRVIEKPDGISSNDPVKMVLKNGVLIPKQKQRRYRTERPFSCDHCSARFTLRSNMERHIKQQHPQFWSQRPRGGHSTRGRPPANLMTQNSNSSASQTQPNILKLEPPMVTSDYNSHPISNQVKYAILAQQLKAKIDDNDSEDEMVIDEEGTGDRDVQEPQTQHESGTSLLRDQLESSDDTKDVIVKTEKDTESAEESLKESRTEQTTQNDVNGVNSEESESVEKKPSATEEANTKESTGREQVKLEDGAPDLASVSKLLDNASQQYQQFKPQYLSDEEGPVASTSGNNSGSEKSDSMNSNSNNTSSNKKKKKKKSAYSLAPNRVICPFCERPFPWSSSLRRHILTHTGQKPYQCKHCSHHFTTKSNCDRHLLRKHRAKANKTRQARNSSSPDIQVVASSSVAANTNNAFSMRNVPERPFKCNQCPSSTFSTLGNLKKHRSTKHRKTVSRSESSDQQNSPPQCAAQNDQSDYESPSSSQSDNSLSATVGAKSNTTTSLNTLTETGRSRKSPRSSPGPGDVPFKCYLCDSGFAERQDCLEHIKVHHRRSYEMLKAKGALEMASMNIDAGEDQMITAQQHHSDGEEKKGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFECDICSRKFTLKHSMLRHRKKHESMDSSMYIGNSGDEENSLAQPPTITPSPISTNTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYDNMATLTGRMANDGSQGAAPAPLSSTPPHAEAPSESGDNDLISNLLGIRDKGLLDKVLRSSADDAAKLLGVNHNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01267792;
90% Identity: iTF_01269283;
80% Identity: -