Basic Information

Insect: Pseudomyrmex flavicornis
Gene Symbol: RREB1
Assembly: GCA_014825475.1
Location: QVNW01001850.1:10113-15608[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.1e-05 0.0033 18.2 1.2 1 23 43 65 43 65 0.97

2 14 5.3e-05 0.0057 17.4 0.1 1 23 80 102 80 102 0.98

3 14 0.0097 1 10.3 0.3 1 23 228 251 228 251 0.96

4 14 0.024 2.6 9.1 2.0 2 23 257 279 257 279 0.96

5 14 0.021 2.2 9.3 0.2 1 23 506 528 506 528 0.96

6 14 2e-05 0.0021 18.8 0.2 1 23 537 559 537 559 0.98

7 14 0.0011 0.11 13.3 2.7 1 23 565 588 565 588 0.96

8 14 0.00063 0.067 14.1 2.9 1 23 959 982 959 982 0.96

9 14 0.00066 0.07 14.0 0.1 3 23 1243 1263 1241 1263 0.97

10 14 0.82 87 4.3 12.4 1 23 1269 1292 1269 1292 0.97

11 14 0.0055 0.59 11.1 2.3 1 23 1336 1360 1336 1360 0.97

12 14 5.6 6e+02 1.6 2.7 1 23 1438 1460 1438 1461 0.94

13 14 0.01 1.1 10.2 0.4 2 23 1514 1535 1513 1535 0.94

14 14 0.0023 0.24 12.3 5.1 1 23 1541 1563 1541 1563 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.1e-05	0.0033	18.2	1.2	1	23	43	65	43	65	0.97
2	14	5.3e-05	0.0057	17.4	0.1	1	23	80	102	80	102	0.98
3	14	0.0097	1	10.3	0.3	1	23	228	251	228	251	0.96
4	14	0.024	2.6	9.1	2.0	2	23	257	279	257	279	0.96
5	14	0.021	2.2	9.3	0.2	1	23	506	528	506	528	0.96
6	14	2e-05	0.0021	18.8	0.2	1	23	537	559	537	559	0.98
7	14	0.0011	0.11	13.3	2.7	1	23	565	588	565	588	0.96
8	14	0.00063	0.067	14.1	2.9	1	23	959	982	959	982	0.96
9	14	0.00066	0.07	14.0	0.1	3	23	1243	1263	1241	1263	0.97
10	14	0.82	87	4.3	12.4	1	23	1269	1292	1269	1292	0.97
11	14	0.0055	0.59	11.1	2.3	1	23	1336	1360	1336	1360	0.97
12	14	5.6	6e+02	1.6	2.7	1	23	1438	1460	1438	1461	0.94
13	14	0.01	1.1	10.2	0.4	2	23	1514	1535	1513	1535	0.94
14	14	0.0023	0.24	12.3	5.1	1	23	1541	1563	1541	1563	0.98

Sequence Information

Coding Sequence: ATGATTTTTTATATTTATGTTTCAGTGACTGAATCTGAGAATGAATCTGATCAGAAGCAAGAAAACGAAGTACAAATCGATGCCGCTTCTCCATCATCAAGCGTTGAGCTGTCGGAGAACAGCACGCATCCGTGCCCGAATTGTCCGTCGGTGTTCTCCAACTCCCATGAGTTGACCAATCATTTGCGCGGCCACAACTCACCGCGTAGCACGGACTGCAGCGGCGAGGAGCTCGACTACAGCTGCAACGTTTGTAACAAGGTGCTCAGCTCGGCGAGTTCGCTGGACCGTCACGTGCTGGTACACTCGGGCGAGCGATCGTTCAAGTCCAAGCACTGCAACAACACGACGACGTACAATACAACGAACGGCAACATGAACCGACACGCGAGAAACGCGCATCGTCTGGTATCGTCAAACAGTTGCACAGATTCCGAAGGTAGCAGCAGCTCGGAGAGACCGGCGATGACGAACCAGGACGAGTACAACAATAACGAGATCGCCAGGCGTAACTCGCCGAATCTAATCGACAATCGACACGACGAACCGTCGCCCAGCGATCGTGAGAGTAAACAGAAATGTTCGGACGACAGTAGCGACACGGAAGAGCAGAGGAGTCACAAGATTCTCATGAATTCTCGGATGATGATGAGATGTCGGCCGGAAGAGGAGCAAAAGACTTTCAGCTGCTCTACCTGCGGACAAAACTTCATGACAAGCGCGATATTGGAGTCTCACATGGACCGCATGCATCCGGAGCTCCAGCCCAAGTGCGAGACCTGCAATCTGTCCTTCAAGAACTACCGTGTACTGAACCTCCATCGTTCCATGAAACATTACAAGAAGCACACCGACGGCAACAACAGCCGGAATCTGCGCAACACCGTGGACGGTTTCAAAGATCTGACGTTCATTGACTTCTCGTCCGACAAGTTTCCGACGATCGCCCGGGCGGTGTGCGAGCGGGAGCTGCACCGACCGGCTTCCGGCGAAGTCAACAGGTTTCAATGCATGAAGTGTTTGCACGCGTTTCCGTGCAAACAAGCCCAGCTGGCGCACGAGAAGGAATGCAGAGGTCCGTACAAGAACAAAAGAAACGACAACAACAATAACGACAACAGTACCAATAATAATTTTGAGACAGATCTAGACGCGCCGTCGGTCCAGGATGATCCCAAGACGAAACAAGAAATGTTCTTCGCCGTGCTGGATCTGCAGAACAAAGCCTCGGCGCACGAGACGAAGGAGTTGAAAGAGTCTAGGGATCCGAAAGAAATCGGCAAGGAGCCGAAGGATATTAAAGATCTTGCAGACATTCCAAGCATTCTGTCCGTCAGCTTGAACTGTCTGCAGACTTTTCCTCGCTCGGACGCCAGCACGCCCGAGAACACCATCAGGTTCCATCCGACCGTCAGCTCGTCAGGTTCTTCTGGCACCTGCTCGTCCGAGTACAACGAAGAAGAAGCGCAGGACGCGTTCACCGCAGAATTTCGGAAGATGAAATTGAAGGGCGAGTTTCCCTGCAGATTGTGCACAACTGTGTTTCCCAATTTGCGAGCGTTGAAGGGACACAATCGTGCGCATATGAACGTGGAGCCGGGAATGCCGTATCCGTGCAACATGTGCCCTTACACCAGCACCGATAAAGGAGCCTTGATGAAACATCTGAGATCGCACAATGGCGACCGGCCGTTCGAATGCTCCATCTGCAATTACGCATTCACCACCAAAGCGAATTGCGAGAGGCATGTGAAGAATCGTCACGGAATGATCAGCAAGGAGGAGGTCAAGAACGTGCTGATATATCATCCGAGTGAAGACTCGACGAACGAAAACGTCGAGAGAAGCTCGCCTCGAGTTGTCAGAGAGGACATGCGAAAGAGTCTCGTTTACCCGAGCGAGCGCGAAGAGACTCCTCAGCAGCAGCAAATTCATTATCCGCCCATACCGTTAGATTGCAATCCCGGACCGTCGAATGTTCGCGCTGAGATGCTGATGACTCGCTACGAGAAGCCGGAGATGTTCACCAGACCGACTAAGACGCAGGCTCTCAACCTCGTGAAGAGAAACGCGCAAGAAGCGAGCGTGTCTCACGATCTAATCGCGAAGCCTAATTATCCGAAAGTTGAAGTCGAGATGAAGGAGGACATCGAGTCGAGATCATCGGATGGCAGCGTGTCTCTAGTCAGTGATACCAATAAAATAGATACACACCAAAGAATTCAAGCTAGTCCGATGAACTTGACGAAACCTATTGGATTGAACTCGGGAGAAGACGGGCCGTTGGATCTGTCGATGGATGTGTTGGATTTGAGCAGAAAACGGAAGAGAGACAATGAGGATGCCGACGGTCACGAAGAGAAACGATTTAAAAACAATCAGTCAGATCTATACGCTACGAATCCGGCGTTGCTGCTGACTCAAGCTCTTCTCAACAGAGCTCGCGAGACTTCTCCGACGTCGTTTGAAACTTTCTACGCCAATACCATTTATCGCAATCTCGGCACGTTGACCAGCGCGAGCATGATACCACCATACTTTCTGAACTCTCACATGTTCAATCAAGACTTAGCTGCGAAAAATAGGCTACAGAAAGAATTAGTGAGGGGCCTGCAGTTAACAGGCGGTGGCACTCTTCCGGTAGATACAGCGATTCCTAGCACCAGTTACGCTTATCCGCAAACAAGAGACGTCACCACTTCGCAGGCATCGAGCGAACAGTGTTATCCAAATCTGATGACCAGTCAGACCGCGCCAAATCGTGTAATCGAAAAACCAGACGGTATATCGTCAAATGATCCCGTTAAGATGGTGCTGAAGAATGGAGTGTTAATTCCTAAGCAGAAGCAACGCAGATACCGTACAGAAAGACCTTTCAGCTGCGATCATTGCTCGGCGAGATTCACACTGAGGAGCAATATGGAGCGCCATATTAAACAGCAGCATCCCCAGTTTTGGAGTCAAAGACCTCGCGGAGGACACTCGACCAGAGGTAGACCACCCGCAAGTCTCATGACGCAAAATTCGAATTCATCGGCTTCGCAAGCTCAACCGAATATTCTCAAACTCGAACCGCCAATAGTTACATCGGATTATAACTCGCATCCCATCTCGAATCAAGTAAAATACGCAATTCTGGCGCAACAATTGAAAGCTAAGATAGACGATAATGATTCGGAAGACGAGATGGTGATAGACGAGGAAGGAACAGGTGACAAGGATGTGCAGGAACCGCAAACTCAGCACGAATCCGGCACGGGCTTGCTGAGAGATCAGTTGGAAAGCAGCGATGATACCAAAGACGTCGTAGTCAAGACAGAAAAAGACACCGAGTCTGCCGAGGAGAGCTTAAAAGAGTCTCGTACCGAACAGACTATTCAAAATGACGTTAACGGAGTCAACTCGGAAGAATCCGAATCTGTCGAAACGAAACCAAGTGCCACTGAAGAGGCAAAGGAATCTACTGGAAGAGAGCAAGTCAAGCTCGAAGACGGAGCGCCCGACCTCGCGAGCGTTTCGAAGCTTCTTGACAACGCGTCTCAGCAATATCAACAATTTAAGCCGCAGTACTTGAGTGACGAGGAAGGACCGGTGGCTTCGACTAGCGGTAACAACTCCGGTAGCGAGAAGTCCGATTCTATGAACTCAAACTCTAATACGACTTCATCGAACAAGAAGAAAAAGAAGAAGAAGTCCGCGTACTCGTTGGCGCCGAATCGCGTGATATGTCCCTTCTGCGAGCGTCCGTTCCCCTGGTCCTCGTCACTGAGACGTCACATCCTCACTCATACCGGCCAGAAGCCGTATCAGTGCAAACACTGCTCGCATCATTTCACCACCAAGTCCAACTGCGATCGCCATTTGTTGAGAAAGCACCGAGCGAAGGCGAATAAAACGCGCCAAGCTAGAAATTCCTCCTCGCCAGACATCCAGGTAGTTGCCAGCAGTAGTGTCGCCGCTAACACTAACAATGCGTTCTCCATGAGGAACGTGCCGGAGAGACCGTTTAAATGCAATCAGTGTCCGAGCTCGACGTTTTCCACGTTAGGCAATTTGAAGAAGCACCGATCGACCAAACATCGCAAGACTGTGTCCAGGTCGGAATCCAGCGATCAGCAAAACAGTCCGCCGCAGTGTGCCGCGCAAAACGACCAGAGCGATTACGAGAGTCCTTCGTCGAGCCAGTCCGATAACTCGTTATCTGCTACCGTAGGCGCAAAATCGAATACCACTACGTCTCTCAATACGCTGACTGAAACCGGCAGATCGCGCAAATCGCCAAGATCGTCTCCGGGACCTGGTGACGTGCCTTTTAAGTGTTACTTGTGCGACAGCGGCTTCGCAGAACGACAAGACTGTTTGGAACATATCAAAGTACATCACCGACGATCTTACGAGATGTTGAAAGCCAAAGGAGCTCTCGAAATGGCGTCTATGAACATAGACGCCGGTGAGGACCAGATGATCACCGCGCAGCAGCATCATAGCGATGGCGAAGAAAAAAAAGGACGTTTTCCAGACTATAGCAATAGAAAGGTAGTGTGCGCTTTCTGCATGAGACGATTTTGGTCCGCGGAAGATCTTCGACGCCACATGCGGACTCACACCGGCGAGAGACCTTTCGAATGCGACATTTGCAGCAGAAAGTTTACGTTGAAGCACAGCATGCTGCGCCACCGCAAGAAGCACGAGTCGATGGACTCCTCTATGTACATAGGCAACAGCGGCGACGAGGAAAATTCACTCGCACAACCGCCGACGATCACACCGTCGCCGATCTCTACCAACACCAGCAGACCCCGCACCCAAGACAGAATCTCCTTACCGACCGTCGCGGCGGTTGCGACAGCGGACGCAGCGCCCTGCGCATTGATGCGATATAATCATTACGATAACATGGCCACTCTCACCGGGAGAATGGCGAACGACGGATCGCAAGGTGCTGCTCCCGCCCCCTTGTCGTCCACACCACCACCTGCGGAGGCGCCCAGCGAGAGCGGAGATAATGATCTGATCTCCAACTTGCTGGGAATACGCGATAAAGGTCTGCTCGACAAGGTACTCCGTAGCTCGGCGGACGATGCGGCTAAGTTACTAGGTGTCAATCACAACGAGTGA
Protein Sequence: MIFYIYVSVTESENESDQKQENEVQIDAASPSSSVELSENSTHPCPNCPSVFSNSHELTNHLRGHNSPRSTDCSGEELDYSCNVCNKVLSSASSLDRHVLVHSGERSFKSKHCNNTTTYNTTNGNMNRHARNAHRLVSSNSCTDSEGSSSSERPAMTNQDEYNNNEIARRNSPNLIDNRHDEPSPSDRESKQKCSDDSSDTEEQRSHKILMNSRMMMRCRPEEEQKTFSCSTCGQNFMTSAILESHMDRMHPELQPKCETCNLSFKNYRVLNLHRSMKHYKKHTDGNNSRNLRNTVDGFKDLTFIDFSSDKFPTIARAVCERELHRPASGEVNRFQCMKCLHAFPCKQAQLAHEKECRGPYKNKRNDNNNNDNSTNNNFETDLDAPSVQDDPKTKQEMFFAVLDLQNKASAHETKELKESRDPKEIGKEPKDIKDLADIPSILSVSLNCLQTFPRSDASTPENTIRFHPTVSSSGSSGTCSSEYNEEEAQDAFTAEFRKMKLKGEFPCRLCTTVFPNLRALKGHNRAHMNVEPGMPYPCNMCPYTSTDKGALMKHLRSHNGDRPFECSICNYAFTTKANCERHVKNRHGMISKEEVKNVLIYHPSEDSTNENVERSSPRVVREDMRKSLVYPSEREETPQQQQIHYPPIPLDCNPGPSNVRAEMLMTRYEKPEMFTRPTKTQALNLVKRNAQEASVSHDLIAKPNYPKVEVEMKEDIESRSSDGSVSLVSDTNKIDTHQRIQASPMNLTKPIGLNSGEDGPLDLSMDVLDLSRKRKRDNEDADGHEEKRFKNNQSDLYATNPALLLTQALLNRARETSPTSFETFYANTIYRNLGTLTSASMIPPYFLNSHMFNQDLAAKNRLQKELVRGLQLTGGGTLPVDTAIPSTSYAYPQTRDVTTSQASSEQCYPNLMTSQTAPNRVIEKPDGISSNDPVKMVLKNGVLIPKQKQRRYRTERPFSCDHCSARFTLRSNMERHIKQQHPQFWSQRPRGGHSTRGRPPASLMTQNSNSSASQAQPNILKLEPPIVTSDYNSHPISNQVKYAILAQQLKAKIDDNDSEDEMVIDEEGTGDKDVQEPQTQHESGTGLLRDQLESSDDTKDVVVKTEKDTESAEESLKESRTEQTIQNDVNGVNSEESESVETKPSATEEAKESTGREQVKLEDGAPDLASVSKLLDNASQQYQQFKPQYLSDEEGPVASTSGNNSGSEKSDSMNSNSNTTSSNKKKKKKKSAYSLAPNRVICPFCERPFPWSSSLRRHILTHTGQKPYQCKHCSHHFTTKSNCDRHLLRKHRAKANKTRQARNSSSPDIQVVASSSVAANTNNAFSMRNVPERPFKCNQCPSSTFSTLGNLKKHRSTKHRKTVSRSESSDQQNSPPQCAAQNDQSDYESPSSSQSDNSLSATVGAKSNTTTSLNTLTETGRSRKSPRSSPGPGDVPFKCYLCDSGFAERQDCLEHIKVHHRRSYEMLKAKGALEMASMNIDAGEDQMITAQQHHSDGEEKKGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFECDICSRKFTLKHSMLRHRKKHESMDSSMYIGNSGDEENSLAQPPTITPSPISTNTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYDNMATLTGRMANDGSQGAAPAPLSSTPPPAEAPSESGDNDLISNLLGIRDKGLLDKVLRSSADDAAKLLGVNHNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01267792;
90% Identity: iTF_01269283;
80% Identity: -