Basic Information

Insect: Pseudomyrmex cubaensis
Gene Symbol: RREB1
Assembly: GCA_014825685.1
Location: QVOA01009723.1:11593-22014[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.2e-05 0.0046 17.7 1.2 1 23 115 137 115 137 0.97

2 14 5.5e-05 0.006 17.4 0.1 1 23 152 174 152 174 0.98

3 14 0.01 1.1 10.3 0.3 1 23 300 323 300 323 0.96

4 14 0.025 2.7 9.0 2.0 2 23 329 351 329 351 0.96

5 14 0.022 2.4 9.2 0.2 1 23 578 600 578 600 0.96

6 14 2.1e-05 0.0023 18.7 0.2 1 23 609 631 609 631 0.98

7 14 0.0011 0.12 13.3 2.7 1 23 637 660 637 660 0.96

8 14 0.00065 0.071 14.0 2.9 1 23 1030 1053 1030 1053 0.96

9 14 0.00068 0.074 13.9 0.1 3 23 1316 1336 1314 1336 0.97

10 14 0.85 92 4.2 12.4 1 23 1342 1365 1342 1365 0.97

11 14 0.0057 0.62 11.0 2.3 1 23 1409 1433 1409 1433 0.97

12 14 5.9 6.4e+02 1.6 2.7 1 23 1511 1533 1511 1534 0.94

13 14 0.011 1.2 10.2 0.4 2 23 1587 1608 1586 1608 0.94

14 14 0.0024 0.26 12.2 5.1 1 23 1614 1636 1614 1636 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.2e-05	0.0046	17.7	1.2	1	23	115	137	115	137	0.97
2	14	5.5e-05	0.006	17.4	0.1	1	23	152	174	152	174	0.98
3	14	0.01	1.1	10.3	0.3	1	23	300	323	300	323	0.96
4	14	0.025	2.7	9.0	2.0	2	23	329	351	329	351	0.96
5	14	0.022	2.4	9.2	0.2	1	23	578	600	578	600	0.96
6	14	2.1e-05	0.0023	18.7	0.2	1	23	609	631	609	631	0.98
7	14	0.0011	0.12	13.3	2.7	1	23	637	660	637	660	0.96
8	14	0.00065	0.071	14.0	2.9	1	23	1030	1053	1030	1053	0.96
9	14	0.00068	0.074	13.9	0.1	3	23	1316	1336	1314	1336	0.97
10	14	0.85	92	4.2	12.4	1	23	1342	1365	1342	1365	0.97
11	14	0.0057	0.62	11.0	2.3	1	23	1409	1433	1409	1433	0.97
12	14	5.9	6.4e+02	1.6	2.7	1	23	1511	1533	1511	1534	0.94
13	14	0.011	1.2	10.2	0.4	2	23	1587	1608	1586	1608	0.94
14	14	0.0024	0.26	12.2	5.1	1	23	1614	1636	1614	1636	0.98

Sequence Information

Coding Sequence: ATGAGTCATTCGCGCAGGTATTCCAAGAGGGTTGCCGAGTTACGGCTCGGTAAACCTAAGATTGTCAGAAAGAGATTCTCAACCAGCCAACCGCCATCTTTGTTCCTCTTGTGTGGTGCGTGGGTGTATCTGAGCGTGGAGGAAGCGGGGATGATGAGGGAGAACTGGACAAAAAGAGGGGAGGATAACGACGAGAGAAAGAGGGAGAGAAACGCCGCCGCCGTCAAAAGCGAGGCGGAGATGACGGAATCTGAGAATGAATCTGATCAGAAGCAAGAAAACGAAGCACAAATCGATGCCGCTTCGCCATCATCAAGCGTCGAGCTGTCGGAGAACAGTACGCATCCGTGCCCGAATTGCCCGTCGGTGTTCTCCAGCTCTCATGAGTTGACCAATCACTTGCGCGGCCACAACTCACCGCGTAGCACGGACTGCAGCGGCGAGGAGCTCGACTACAGCTGCAACGTTTGTAACAAAGTGCTCAGCTCGGCGAGTTCGCTGGACCGTCACGTACTGGTACACTCGGGCGAGCGGTCGTTCAAGTCCAAGCACTGCAACAACACGACGACGTACAATACAACGAACGGCAACATGAACCGACACGCGAGAAACGCGCATCGTCTGGTATCGTCGAACAGTTGCACAGATTCCGAAGGTAGCAGCAGCTCGGAGAGGCCGGCGATAACGAACCAGGACGAGTACAACAATAACGAGATCGCTAGGCGTAACTCGCCGGATCTGATCGACGATCGACACGACGAACCGTCGCCCAGCGATCGTGAGAGCAAACAGAAATGTTCGGACGACAGCAGCGACACGGAGGAGCAGAGGAGTCACAAGATTCTCATGAACTCTCGGATGATGATGAGGTGTCGACCGGAAGAAGAGCAAAAGACTTTCAGCTGCTCTACTTGCGGACAAAACTTCATGACAAGCGCGATATTGGAGTCTCACATGGACCGCATGCATCCGGAACTTTTGCCGAAATGCGAGACCTGCAATCTGTCCTTCAAGAATTATCGTGTACTGAACCTCCATCGTTCCATGAAACATTACAAGAAACACACCGACGGCAACAACAGCCGGAATCTGCGCAACACCGTGGACGGCTTCAAAGATCTGACGTTCATCGACTTCTCGTCCGACAAGTTTCCGACGATCGCCCGGGCGGTGTGCGAGCGGGAGCTGCACCGACCGGCTTCCGGCGAAGTCAACAGGTTTCAATGCATGAAGTGTTTGCACGCGTTTCCGTGCAAACAAGCCCAGCTGGCGCACGAGAAGGAATGCAGAGGTCCGTACAAGAACAAAAGAAACGACAACAACAACAATAATGACAACAGTACCAATAATAATTTTGAGACAGATCTAGACGCGCCTTCGGTCCAGGATGATCCCAAGACGAAACAAGAAATGTTCTTCGCCGTGCTGGATCTGCAGAACAAAGCCTCGGCGCACGAGGCGAAGGAGTTGAAAGAGTCGAAAGATCCGAAAGAAGTCAAGGATCCGAGGGATATTAAAGATCTTGCAGACATTCCAAGCATTCTGTCCGTCAGCTTGAACTGTCTGCAAACTTTTCCTCGCTCGGACGCCAGCACGCCCGAGAACACCATCAGATTCCATCCGACCGTCAGCTCGTCAGGCTCTTCTGGCACTTGCTCGTCCGAGTACAACGAAGAAGAGGCGCAGGACGCGTTCACCGCAGAATTTCGGAAAATGAAATTGAAGGGCGAGTTTCCTTGCAGATTGTGCACAACTGTGTTTCCCAATTTGCGGGCGTTGAAGGGACACAATCGTGCGCATATGAACGTAGAGCCGGGAATGCCGTATCCGTGCAACATGTGCCCTTACACCAGCACCGATAAAGGAGCCTTGATGAAACATCTGAGATCGCACAATGGCGACCGGCCGTTCGAATGCTCCATCTGCAATTACGCATTCACCACCAAAGCGAATTGCGAGAGGCATGTGAAGAATCGTCACGGAATGATCAGCAAGGAGGAGGTCAAGAACGTGCTGATATACCATCCGAGTGAAGACTCGACGAACGACAACGTCGAGAGAAGCTCGCCCCGAGTTGTCAGGGAGGACATGCGAAAGAGTCTCGTTTATCCGAGCGAGCGCGAAGAGACTCCACAGCAACAGCAAATTCATTATCCGCCGTTAGATTGCAATCCCGGACCATCGAATGTTCGCGCTGAGATGCTGATGACTCGCTACGAGAAGCCGGAGATGTTCACCAGACCGACTAAGTCGCAGGCTCTCAACCTCGTGAAGAGAAACGCGCAAGAAGCGAGCGTGTCTCACGATCTAATCGCGAAGCCTAATTATCCGAAAGTTGAAGGAGTCGAGATGAAGGAGGACATCGAGTCGAGATCATCGGATAGCAGCGTGTCTCTAGTCAGTGATACCAATAAAATAGATACACACCAAAGAATTCAAGCTAGTCCGATGAACTTGACAAAACCTATTGGATTGAACTCGGGAGAGGACGGGCCGTTGGATTTGTCGATGGATGTGTTAGATTTGAGCAGAAAACGGAAGAGAGACAATGAGGATGCCGACGGCCACGAAGAGAAACGATTTAAAAACAATCAATCAGATCTATACGCTACGAATCCGGCGTTGCTGCTGACTCAAGCTCTTCTCAACAGAGCTCGCGAGACTTCTCCGACGTCGCTCGAAACTTTCTACGCCAATACCCTTTATCGCAATCTCAACACGTTGACCAGCGCAAGCATGATACCACCATACTTTCTGAATTCTCATATGTTCAATCAAGACTTAGTTGCAAAAAATAGGCTACAGAAGGGATTGGTGAGAGGCCTGCAGTTAACAGGCGGTGGCACTCTTCCGGTAGATACAGCGATTCCTAGCACCAGTTACGCTTATCCGCAAACAAGAGACGTCACCACTTCGCAGGCACCGAGCGAACAGTGTTATCCAAATCTGATGGCCAGTCAGACCGCGCCAAATCGTGTAATCGAAAAACCGGACGGTATATCGTCAAATGATCCCGTTAAAATGGTGCTGAAGAATGGAGTGTTAATTCCTAAGCAGAAGCAACGCAGATACCGTACAGAAAGACCTTTCAGCTGCGATCATTGCTCGGCGAGATTCACACTGAGGAGCAATATGGAGCGCCATATTAAACAACAGCATCCCCAGTTTTGGAGTCAAAGACCTCGCGGAGGACATTCGACCAGAGGTAGACCGCCCGCAAGTCTCATGGCGCAAAATTCGAATTCGTCGGCTTCGCAAGCTCAACCGAATATTCTCAAACTCGAACCGCCAATGGTTACATCGGATTATAACTCGCATCCCATCTCGAATCAAGTAAAATACGCAATTCTGGCGCAACAATTGAAAGCTAAGATAGACGATAACGATTCGGAGGACGAGATGGTGATAGACGAGGAGGGAACAGGTGACAGAGATGTTCAGGAACCGCAAACTCAGCACGAATCGGGCACGAGCTTGCTGAGAGATCAGTTGGAAAGCAGCGATGATACCAAAGACGTCGTAGTCAAGACAGAAAAAGACACCGAGTCTGCTGAGGAGAGCTTAAAAGAGTCTCGTACCGAACAGACTACTCAAAATGACGTTAACGGAGTCAACTCGGAAGAATCCGAATCTGTCGAAAAGAAACCAAGTGCCACTGAAGAGGCAAACACAAAGGAACCTACTGGAAGAGAGCAAGTCAAGCTCGAAGACGGAGCACCCGACCTCGCGAGCGTTTCGAAGCTTCTTGACAACGCGTCTCAACAATACCAACAATTTAAACCGCAGTACTTGAGCGACGAGGAAGGACCGGTGGCTTCGACTAGCGGTAACAACTCCGGTAGCGAGAAGTCCGATTCTGTGAACTCAAACTCTAATAACACTTCGTCGAACAAGAAGAAAAAAAAGAAGAAGTCCGCATACTCGTTGGCGCCGAATCGCGTGATATGTCCTTTCTGCGAGCGTCCGTTCCCCTGGTCCTCGTCACTGAGACGCCACATCCTCACTCATACCGGTCAGAAGCCGTATCAGTGCAAACACTGCTCGCATCATTTCACCACCAAGTCCAACTGCGATCGCCATTTGTTGAGAAAGCACCGAGCGAAGGCGAATAAAACGCGCCAAGCTAGAAATTCCTCCTCGCCAGACATCCAGGTAGTTGCCAGCAGTAGTGTCTCCGCTAACACTAACAATGCGTTCTCCATGAGAAACGTGCCCGAGAGACCGTTTAAATGCAATCAGTGTCCGAGCTCGACGTTCTCCACGTTAGGCAATTTGAAGAAGCACCGATCGACCAAACATCGCAAGACTGTGTCCAGGTCGGAATCCAGCGATCAGCAAAACAGTCCGCCGCAGTGTGCCGCGCAAAACGACCAGAGCGATTACGAGAGTCCTTCGTCGAGTCAATCCGACAACTCGTTATCTGCTACCGTAAACGCAAAATCGAATACCACTACGTCTCTCAATACGCTGACTGAAACCGGAAGATCGCGCAAATCGCCAAGATCGTCTCCGGGACCTGGTGACGTGCCTTTCAAGTGTTACTTATGCGACAGCGGCTTCGCAGAACGACAAGACTGTTTGGAACATATCAAAGTACATCACCGACGATCTTACGAGATGTTGAAGGCCAAAGGAGCTCTCGAAATGGCGTCTATGAACATAGACGCCGGTGAGGACCAGATGATCACCGCGCAGCAGCATCATAGCGATGGCGAAGAAAAAAAAGGACGTTTTCCGGACTATAGCAATAGAAAGGTTGTGTGCGCTTTCTGCATGAGACGATTTTGGTCCGCGGAAGATCTTCGACGTCACATGCGGACTCACACCGGCGAGAGACCTTTCGAATGCGACATTTGCAGCAGAAAGTTCACGTTGAAGCACAGCATGCTGCGCCACCGCAAGAAGCACGAATCGATGGACTCCTCCATGTACATAGGTAACAGCGGCGACGAGGAAAATTCACTCGCACAACCGCCAACGATCACACCGTCGCCAATTTCTACCAACACCAGCAGACCCCGCACCCAAGACAGAATCTCCTTACCGACCGTCGCGGCGGTTGCGACAGCGGACGCAGCACCCTGCGCATTGATGCGATATAATCATTACGATAACATGGCCACTCTCACCGGGAGAATGGCGAACGATGGATCGCAAGGTGCTGCTCCCGCCCCTTTGTCGTCCACACCACCACCTGCGGAGGCGCCCAGCGAGAGCGGAGATAACGATCTGATCTCCAACTTGCTGGGAATACGCGATAAAGGTCTGCTCGACAAGGTACTCCGTAGCTCGGCAGACGATGCGGCCAAGTTACTGGGTGTCAATCATAACGAGTGA
Protein Sequence: MSHSRRYSKRVAELRLGKPKIVRKRFSTSQPPSLFLLCGAWVYLSVEEAGMMRENWTKRGEDNDERKRERNAAAVKSEAEMTESENESDQKQENEAQIDAASPSSSVELSENSTHPCPNCPSVFSSSHELTNHLRGHNSPRSTDCSGEELDYSCNVCNKVLSSASSLDRHVLVHSGERSFKSKHCNNTTTYNTTNGNMNRHARNAHRLVSSNSCTDSEGSSSSERPAITNQDEYNNNEIARRNSPDLIDDRHDEPSPSDRESKQKCSDDSSDTEEQRSHKILMNSRMMMRCRPEEEQKTFSCSTCGQNFMTSAILESHMDRMHPELLPKCETCNLSFKNYRVLNLHRSMKHYKKHTDGNNSRNLRNTVDGFKDLTFIDFSSDKFPTIARAVCERELHRPASGEVNRFQCMKCLHAFPCKQAQLAHEKECRGPYKNKRNDNNNNNDNSTNNNFETDLDAPSVQDDPKTKQEMFFAVLDLQNKASAHEAKELKESKDPKEVKDPRDIKDLADIPSILSVSLNCLQTFPRSDASTPENTIRFHPTVSSSGSSGTCSSEYNEEEAQDAFTAEFRKMKLKGEFPCRLCTTVFPNLRALKGHNRAHMNVEPGMPYPCNMCPYTSTDKGALMKHLRSHNGDRPFECSICNYAFTTKANCERHVKNRHGMISKEEVKNVLIYHPSEDSTNDNVERSSPRVVREDMRKSLVYPSEREETPQQQQIHYPPLDCNPGPSNVRAEMLMTRYEKPEMFTRPTKSQALNLVKRNAQEASVSHDLIAKPNYPKVEGVEMKEDIESRSSDSSVSLVSDTNKIDTHQRIQASPMNLTKPIGLNSGEDGPLDLSMDVLDLSRKRKRDNEDADGHEEKRFKNNQSDLYATNPALLLTQALLNRARETSPTSLETFYANTLYRNLNTLTSASMIPPYFLNSHMFNQDLVAKNRLQKGLVRGLQLTGGGTLPVDTAIPSTSYAYPQTRDVTTSQAPSEQCYPNLMASQTAPNRVIEKPDGISSNDPVKMVLKNGVLIPKQKQRRYRTERPFSCDHCSARFTLRSNMERHIKQQHPQFWSQRPRGGHSTRGRPPASLMAQNSNSSASQAQPNILKLEPPMVTSDYNSHPISNQVKYAILAQQLKAKIDDNDSEDEMVIDEEGTGDRDVQEPQTQHESGTSLLRDQLESSDDTKDVVVKTEKDTESAEESLKESRTEQTTQNDVNGVNSEESESVEKKPSATEEANTKEPTGREQVKLEDGAPDLASVSKLLDNASQQYQQFKPQYLSDEEGPVASTSGNNSGSEKSDSVNSNSNNTSSNKKKKKKKSAYSLAPNRVICPFCERPFPWSSSLRRHILTHTGQKPYQCKHCSHHFTTKSNCDRHLLRKHRAKANKTRQARNSSSPDIQVVASSSVSANTNNAFSMRNVPERPFKCNQCPSSTFSTLGNLKKHRSTKHRKTVSRSESSDQQNSPPQCAAQNDQSDYESPSSSQSDNSLSATVNAKSNTTTSLNTLTETGRSRKSPRSSPGPGDVPFKCYLCDSGFAERQDCLEHIKVHHRRSYEMLKAKGALEMASMNIDAGEDQMITAQQHHSDGEEKKGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFECDICSRKFTLKHSMLRHRKKHESMDSSMYIGNSGDEENSLAQPPTITPSPISTNTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYDNMATLTGRMANDGSQGAAPAPLSSTPPPAEAPSESGDNDLISNLLGIRDKGLLDKVLRSSADDAAKLLGVNHNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01268514; iTF_01271458; iTF_01267095; iTF_01269283; iTF_01270025; iTF_01270730;
90% Identity: iTF_01269283;
80% Identity: -