Pazu005293.1
Basic Information
- Insect
- Protocalliphora azurea
- Gene Symbol
- -
- Assembly
- GCA_932273785.1
- Location
- CAKNZW010000132.1:1227003-1228933[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.32 2.3e+03 -0.9 0.0 26 48 11 33 3 39 0.80 2 9 0.022 1.6e+02 2.8 0.1 23 48 39 64 26 66 0.84 3 9 0.00011 0.79 10.1 0.8 23 48 69 94 65 99 0.90 4 9 0.071 5.1e+02 1.1 0.0 22 45 97 120 94 124 0.85 5 9 0.019 1.4e+02 3.0 0.1 24 48 127 151 120 155 0.82 6 9 0.0044 31 5.0 0.0 26 52 232 258 226 260 0.89 7 9 1.4e-07 0.001 19.4 0.2 22 46 262 286 257 290 0.87 8 9 0.0002 1.4 9.3 0.5 19 48 289 318 286 322 0.93 9 9 2.2 1.6e+04 -3.6 0.0 40 50 333 344 325 345 0.62
Sequence Information
- Coding Sequence
- ATGCATAGTCATGATCCAACTAAACGACAAATATGTGATAAATGTGGTAAAACTTTTAAAAATAATTACAACATGAAAAAACACGAAGAATCTGAACATTCTGAGGTTAAACCTGAACCTCGACAATGTACGATTTGCAATACATGGTATCGCAATTTGAATGGTTTAAAGACTCATATGAAAAATATGCACGATAATGTGGGTCAAGAACATCGTTGTAGTATATGCAACAAAGTATCTACTACACAACGAGCCCTTAAACGGCATATTTATTTAAATCATAAATGTGAAAAGAAATTCAAATGTAATATGTGTGATAAGGCTTTTAAAAGGGGTCAGGATTTAAGAGAACATATATCTGTGCATACGGGTGAAGCTTTATATACATGTCCTAATTGCCCTATGACTTTTTCATCTAGTGCTAATATGTATAAACATCGTCAGCGTTTACATAAGGCCGAATATGCTGCTTACAAACAACAGGCTATGCCCCCTAATATTATAAAGCAAGCTAAAACGGGTGCTGTAAATAAAATTCGCACTAAAAGGCGTTTTATGGGTTCGTCGAGTAATGAATCTCTTCATTTAATTTCACCTGAACAGCATGTTACTTCAGAATTTGAAACGAATGCATTTCCCAGCAAAACTAAACTTACATCTCATCTGCCCGTTCATAGCACCGTCTGCACTTGTATGTGCGATATTTGCGGCAATACGTTCAAAAGTAAATTTACTCTAAAAAAACATATAGAATATCAACACTCGGGAAATCCGCGAAAAGATAAGGAACCCCAACAATGTCCCATTTGTTATAAGGTGTTAAGAGGCCACAAGGGTCTTAGGGCTCACATGAGTAATATACATGCTGAAAGTGAACAGGAACATCGATGTAAAATTTGTAATCACGTATCGACAACAGCTAAAGGTTTACGTGTCCATGAGATATTTCGTCATGAGAAGGAGAGAAAACATAAATGCTCATTGTGTGATAAGGCATTTAAGAGACCATTGGATTTGAAAGAGCATTTTGCTACGCACACAGGCATGTCTTTGTACAAATGTGCTGAATGTCAGGCAACATTTAAATCAAACTCAAATTACTATCATCATAAAAGACGTTTTCATAGTGGAAACCTGAAAGGAGAATTATTGATTAAAATAGCCGATTGTCCTTAA
- Protein Sequence
- MHSHDPTKRQICDKCGKTFKNNYNMKKHEESEHSEVKPEPRQCTICNTWYRNLNGLKTHMKNMHDNVGQEHRCSICNKVSTTQRALKRHIYLNHKCEKKFKCNMCDKAFKRGQDLREHISVHTGEALYTCPNCPMTFSSSANMYKHRQRLHKAEYAAYKQQAMPPNIIKQAKTGAVNKIRTKRRFMGSSSNESLHLISPEQHVTSEFETNAFPSKTKLTSHLPVHSTVCTCMCDICGNTFKSKFTLKKHIEYQHSGNPRKDKEPQQCPICYKVLRGHKGLRAHMSNIHAESEQEHRCKICNHVSTTAKGLRVHEIFRHEKERKHKCSLCDKAFKRPLDLKEHFATHTGMSLYKCAECQATFKSNSNYYHHKRRFHSGNLKGELLIKIADCP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259395; iTF_01202133; iTF_01201825;
- 90% Identity
- iTF_01259395;
- 80% Identity
- iTF_01259395;