Pmel008547.1
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- Hivep2
- Assembly
- GCA_941918875.1
- Location
- CALNXE010000860.1:212762-218833[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.61 3.4e+03 -1.1 0.0 27 48 12 33 4 39 0.82 2 8 0.038 2.1e+02 2.7 0.1 23 47 39 63 26 66 0.83 3 8 0.00018 1 10.2 1.2 22 48 68 94 61 100 0.90 4 8 0.14 7.9e+02 0.9 0.0 22 45 97 120 95 123 0.85 5 8 0.031 1.7e+02 3.0 0.1 24 48 127 151 120 156 0.83 6 8 0.014 78 4.1 0.1 25 48 237 260 221 264 0.88 7 8 9.1e-07 0.0051 17.5 0.1 23 46 269 292 261 298 0.87 8 8 0.038 2.1e+02 2.7 0.2 23 48 299 324 295 329 0.89
Sequence Information
- Coding Sequence
- ATGCATAGCCACGATCCAACAAAACGGCAAATATGTGATAAATGTGGTAAAACTTTTAAAAATAATTACAATATGAAAAAACATGAAGAATCTGAACATTCTGAGGTAAAGCCGGAACCACAACAATGTACAATTTGCAACACTTGGTATCGCAACTTGTCTggtttaaagacacacatgaaaaatatgcacgataatatggatcaagagcatcgttgtcatatttgcaacaaagtatcgaccacacagcgtgcccttaagcggcatatctatttaaaccataagtgtgaaaagaaatttaaatgtaatatgtgtgataaggcttttaagaggggtcaagatttaagagaacatatttctgtgcatacaggcgaagctttgtatacttgtcccaattgtcccatgacattttcatctagtgccaatatgtataaacatcgtCAGCGTTTACATAAGGCTGAATATGCTGCGTGCAAACAGCAAGCTATGCCTCCTAATATAATAAAACAAGCTAAAAGAGGTGCAGCAAATAAATTGCGTATTAAAAGGCGCTTCATTGGTTTGACAACTACAGAATCTCATGATAATATTGCTATCATTTCACCAGTACTCAATGTTTCTTCAGAACTACAAGCGAACTCCTCCTCAATATTCCCCACCAAAAGTAAACTCACCGCCCACCAGCCCGTTCACAGTAGCATCTGCACTTGTATGTGTGATATTTGCGGCAATACCTTTAAAAATAAATTTACTCTAAAAAAACACATTGAGTATCATCATTCGGAAAATCGACGACTGGATATAGAGCCTAAACAATGTCCCATCTGTTATAAAATTCTAAGAGGCAATAAAGGACTTAGAGCGCACGTAAAAAATATACATGATGACAATGGACAGGAGCATCGTTGTAAAGTTTGTAATCATGTCTCGACGACGGCTAAAGGCTTAAGAGTGCACGAGATATTTCGTCATGAAAAGGAGAGAAATCACAAGTGCTCTTTGTGCGATAAGGCTTTTAAGAGACCATTGGAATTGAAAgaacatatggccacccatacaggcgaaccgttgtatacttgtgttaattgtggtaaaacattcaagtccaaagcgaacatgtttcatcatcgcaGGCGTTTCCACAGAGCCGAGTGGATTGCAGATCGCACAAAACCCCCTAAAGAGAAATATTCAAGAAACTAA
- Protein Sequence
- MHSHDPTKRQICDKCGKTFKNNYNMKKHEESEHSEVKPEPQQCTICNTWYRNLSGLKTHMKNMHDNMDQEHRCHICNKVSTTQRALKRHIYLNHKCEKKFKCNMCDKAFKRGQDLREHISVHTGEALYTCPNCPMTFSSSANMYKHRQRLHKAEYAACKQQAMPPNIIKQAKRGAANKLRIKRRFIGLTTTESHDNIAIISPVLNVSSELQANSSSIFPTKSKLTAHQPVHSSICTCMCDICGNTFKNKFTLKKHIEYHHSENRRLDIEPKQCPICYKILRGNKGLRAHVKNIHDDNGQEHRCKVCNHVSTTAKGLRVHEIFRHEKERNHKCSLCDKAFKRPLELKEHMATHTGEPLYTCVNCGKTFKSKANMFHHRRRFHRAEWIADRTKPPKEKYSRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259742;
- 90% Identity
- iTF_01201825;
- 80% Identity
- iTF_01201825;