Pmel008547.1
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- Hivep2
- Assembly
- GCA_941918875.1
- Location
- CALNXE010000860.1:212762-218833[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.7e-06 0.00022 22.1 1.2 3 23 12 33 10 33 0.93 2 11 0.0012 0.096 13.8 0.9 2 23 42 64 41 64 0.96 3 11 4.6e-05 0.0037 18.2 4.0 1 23 71 94 71 94 0.93 4 11 2.3e-06 0.00019 22.3 0.5 1 23 100 122 100 122 0.98 5 11 5.3e-06 0.00043 21.2 0.9 1 23 128 151 128 151 0.97 6 11 2.8 2.3e+02 3.2 0.0 10 20 218 228 217 231 0.88 7 11 0.0001 0.0083 17.1 5.4 2 23 238 259 237 260 0.93 8 11 0.004 0.33 12.1 0.2 2 23 272 294 271 294 0.96 9 11 0.018 1.4 10.1 2.3 1 22 301 322 301 324 0.89 10 11 8.2e-07 6.7e-05 23.7 1.2 1 23 330 352 330 352 0.98 11 11 7.4e-06 0.0006 20.7 5.3 1 23 358 381 358 381 0.98
Sequence Information
- Coding Sequence
- ATGCATAGCCACGATCCAACAAAACGGCAAATATGTGATAAATGTGGTAAAACTTTTAAAAATAATTACAATATGAAAAAACATGAAGAATCTGAACATTCTGAGGTAAAGCCGGAACCACAACAATGTACAATTTGCAACACTTGGTATCGCAACTTGTCTggtttaaagacacacatgaaaaatatgcacgataatatggatcaagagcatcgttgtcatatttgcaacaaagtatcgaccacacagcgtgcccttaagcggcatatctatttaaaccataagtgtgaaaagaaatttaaatgtaatatgtgtgataaggcttttaagaggggtcaagatttaagagaacatatttctgtgcatacaggcgaagctttgtatacttgtcccaattgtcccatgacattttcatctagtgccaatatgtataaacatcgtCAGCGTTTACATAAGGCTGAATATGCTGCGTGCAAACAGCAAGCTATGCCTCCTAATATAATAAAACAAGCTAAAAGAGGTGCAGCAAATAAATTGCGTATTAAAAGGCGCTTCATTGGTTTGACAACTACAGAATCTCATGATAATATTGCTATCATTTCACCAGTACTCAATGTTTCTTCAGAACTACAAGCGAACTCCTCCTCAATATTCCCCACCAAAAGTAAACTCACCGCCCACCAGCCCGTTCACAGTAGCATCTGCACTTGTATGTGTGATATTTGCGGCAATACCTTTAAAAATAAATTTACTCTAAAAAAACACATTGAGTATCATCATTCGGAAAATCGACGACTGGATATAGAGCCTAAACAATGTCCCATCTGTTATAAAATTCTAAGAGGCAATAAAGGACTTAGAGCGCACGTAAAAAATATACATGATGACAATGGACAGGAGCATCGTTGTAAAGTTTGTAATCATGTCTCGACGACGGCTAAAGGCTTAAGAGTGCACGAGATATTTCGTCATGAAAAGGAGAGAAATCACAAGTGCTCTTTGTGCGATAAGGCTTTTAAGAGACCATTGGAATTGAAAgaacatatggccacccatacaggcgaaccgttgtatacttgtgttaattgtggtaaaacattcaagtccaaagcgaacatgtttcatcatcgcaGGCGTTTCCACAGAGCCGAGTGGATTGCAGATCGCACAAAACCCCCTAAAGAGAAATATTCAAGAAACTAA
- Protein Sequence
- MHSHDPTKRQICDKCGKTFKNNYNMKKHEESEHSEVKPEPQQCTICNTWYRNLSGLKTHMKNMHDNMDQEHRCHICNKVSTTQRALKRHIYLNHKCEKKFKCNMCDKAFKRGQDLREHISVHTGEALYTCPNCPMTFSSSANMYKHRQRLHKAEYAACKQQAMPPNIIKQAKRGAANKLRIKRRFIGLTTTESHDNIAIISPVLNVSSELQANSSSIFPTKSKLTAHQPVHSSICTCMCDICGNTFKNKFTLKKHIEYHHSENRRLDIEPKQCPICYKILRGNKGLRAHVKNIHDDNGQEHRCKVCNHVSTTAKGLRVHEIFRHEKERNHKCSLCDKAFKRPLELKEHMATHTGEPLYTCVNCGKTFKSKANMFHHRRRFHRAEWIADRTKPPKEKYSRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259742;
- 90% Identity
- iTF_01202133;
- 80% Identity
- iTF_01202133;