Pazu003894.1
Basic Information
- Insect
- Protocalliphora azurea
- Gene Symbol
- Mbd2
- Assembly
- GCA_932273785.1
- Location
- CAKNZW010000093.1:394465-396547[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-27 1.4e-23 82.5 0.0 1 73 9 76 9 80 0.95 2 2 7.3e-06 0.031 14.1 0.0 27 75 211 270 194 272 0.88
Sequence Information
- Coding Sequence
- ATGAAAATGAACTCGAATATTTCAATTGAACGTAAAAAAGTAGACTGTAATGCCCTGCCTAAAGGATGGCAAAGAGAAGAAGTTTTACGAAAGTCTGGAATCTCAGCGGGAAAAGTTGATGTCTACTATTACAGTCCTACTGGAAAACGTATTGATAGTAAACCACAATTGGCAAGATATTTAGGAGATGCCATAGATATAAGCAGTTTTGATTTTCAAAAGGGCAAATTTATACAACATCTGCCCTCCCCCTCTATATCACTATACCGCTGTATACCAGGTACTACTACATCGGTAGTCAGCAGTAGTGCGGCCAATAATAGTGTGGGAGGCATTGGTAATAGTAGTAGTAGTAGCGCTGCCCTTACTGTTGCTGCTGGTGGTTCTACTACTTTACCAACATTGGGTGGTGGTATTACTATAATACCAGCACATCAGTCATCTGTGGGACACAATTTAAAGCGAAAACATAGAATGGGATCTCAATCATCAAGTTTAAATTTACCCTCATCTTCGTCGTCTTCTACTTCAATTTCCAGTCATCATAATCTTTTAAGTTCTAGCACGACGATGACAACAACGACGACATCAACAAATTTGCCACTTAAGCAACAACAATTAGAATTCAGTCGTGCTATGCGAACAGATATCTCACTGGTGCCACCTATACGTCAGACGGCCTCCATTTTTAAGCAACCCGTTACAGTAATACGAAATCATGAAAACAGTAAGACTAAGAATGACACAAAACAAGGAGTACAACAACAAGATAAACCTAAACAATTATTTTGGGAAAAACGTTTAGAACGCATGCGAGCCTGTCATGTAACTGGTGAACAATTTGATGATATTGTGCTGCCCAAGAGTCTGAAACCTTTAGGGCCCAATGTTCATGAACAGACTGTTATGCAATCACTAGCCACTGCTTTACATGTACTCAATACACCCGTAACTGGACAAACTGCTTCCAAGACTGAATTTCAAAAAAACGCCACAGCTTTCATCAATCCTGACCAACCGCTAATGCAGGGTATTCTCATATCAGAGGATGATATACGACGGCAAGAGGATCGCGTAAATGTGGCACGAAGAAAACTGCAAGAAGCTTTAAAAGCTTAA
- Protein Sequence
- MKMNSNISIERKKVDCNALPKGWQREEVLRKSGISAGKVDVYYYSPTGKRIDSKPQLARYLGDAIDISSFDFQKGKFIQHLPSPSISLYRCIPGTTTSVVSSSAANNSVGGIGNSSSSSAALTVAAGGSTTLPTLGGGITIIPAHQSSVGHNLKRKHRMGSQSSSLNLPSSSSSSTSISSHHNLLSSSTTMTTTTTSTNLPLKQQQLEFSRAMRTDISLVPPIRQTASIFKQPVTVIRNHENSKTKNDTKQGVQQQDKPKQLFWEKRLERMRACHVTGEQFDDIVLPKSLKPLGPNVHEQTVMQSLATALHVLNTPVTGQTASKTEFQKNATAFINPDQPLMQGILISEDDIRRQEDRVNVARRKLQEALKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00331517;
- 90% Identity
- iTF_01194410;
- 80% Identity
- -