Preg000931.1
Basic Information
- Insect
- Phormia regina
- Gene Symbol
- Mbd2_1
- Assembly
- GCA_001735585.1
- Location
- MINJ01041525.1:680-2718[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-27 2.5e-23 82.5 0.0 1 73 9 76 9 80 0.95 2 2 4.6e-06 0.034 14.8 0.0 27 75 211 270 194 272 0.87
Sequence Information
- Coding Sequence
- ATGCAAATGAACTCGAATATTTCAATTGAACGTAAAAAAGTAGACTGTAATGCCCTGCCTAAAGGATGGCAAAGAGAAGAAGTTTTACGAAAGTCTGGAATCTCAGCGGGAAAAGTTGATGTCTACTATTACAGTCCTACTGGAAAACGTATTGATAGTAAACCACAATTGGCAAGATATTTAGGAGATGCCATAGATATAAGCAGTTTTGATTTTCAAAAGGGCAAATTTATACAACATCTGCCCTCCCCCTCTATATCACTATACCGCTGTATACCCGGTACTACTACATCAGTAGTCAGCAGTAGTGCAGGCAGTGGTAGTTTGGGAGGTATTGGTGGTAGTGGTAGTAGTGCTGCCCTTACTGTTGCTGCTGGTAGTTCTACTACATTACCTACATTGGGTGGTGGTATTACTATAATACCAGCACATCACTCATCTGTGGGACATAATTTAAAGCGTAAACATAGAATGGGATCTCAATCATCAAGTTTAAATTTACCCTCACCCTCGTCGTCTTCTACTTCAATTTCCAGTCATCATAATCTTTTAAGTTCTTGCACTACGATGACAACAACAACGACGACATCAACAAATTTGCCACTTAAGCAACAGCAATTAGAATTCAGTCGTGCTATGCGAACAGATGTCTCACTAGTGCCACCTATACGTCAGACGGCCTCCATTTTTAAACAACCTGTTACAGTAATACGTAACCACGAAAACAGCAAGACTAGAAATGATACAAAACAAGGAGCACAACAACAAGATAAACCTAAACAATTGTTTTGGGAGAAACGTTTAGAACGTATGCGAGCCTGTCATGCAACTGGTGAACAATTTGACGATATTGTACTGCCCAAGAGTCTAAAACCATTAGGGCCTAATGTTCACGAACAGACTGTTATGCAATCACTAGCCACTGCTTTGCATGTACTCAATACACCTGTAACTGGACAAACTGCTAGCAAgactgaatttcaaaaaaacgcCACAGCTTTTATCAATCCTGACCAACCGCTTATGCAGGGAATTCTCATATCAGAAGATGACATACGACGGCAAGAGGATCGTGTTAATGTGGCACGAAGAAAACTGCAAGAagctttaaaagcttaa
- Protein Sequence
- MQMNSNISIERKKVDCNALPKGWQREEVLRKSGISAGKVDVYYYSPTGKRIDSKPQLARYLGDAIDISSFDFQKGKFIQHLPSPSISLYRCIPGTTTSVVSSSAGSGSLGGIGGSGSSAALTVAAGSSTTLPTLGGGITIIPAHHSSVGHNLKRKHRMGSQSSSLNLPSPSSSSTSISSHHNLLSSCTTMTTTTTTSTNLPLKQQQLEFSRAMRTDVSLVPPIRQTASIFKQPVTVIRNHENSKTRNDTKQGAQQQDKPKQLFWEKRLERMRACHATGEQFDDIVLPKSLKPLGPNVHEQTVMQSLATALHVLNTPVTGQTASKTEFQKNATAFINPDQPLMQGILISEDDIRRQEDRVNVARRKLQEALKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00331517;
- 90% Identity
- iTF_01259206; iTF_01261002;
- 80% Identity
- -