Pimp030486.1
Basic Information
- Insect
- Prenolepis imparis
- Gene Symbol
- E2F5
- Assembly
- GCA_030444845.1
- Location
- JAUDTA010000012.1:984805-986724[-]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-29 2.2e-25 89.6 0.2 2 65 10 74 9 74 0.98
Sequence Information
- Coding Sequence
- ATGGCAGATAATCAGCAGAGCCGTTTCGAGAAGTCCCTCGGATTGCTGACCACCCGCTTCGTCACCTTGCTGCAGAAAGCCAAGGACGGCGTGCTCGATTTGAAAATCGCCGCGGATCTCCTGGAGGTGCGACAGAAACGCCGCATTTACGACATCACAAACGTCCTCGAGGGTATCGGTCTTATAGAGAAGAAGAGCAAGAACAGCATCCAATGGAAGGGTGCAGGACCTGGCTGCAATACTCAAGAGGTTGGCGAGAAGCTGACAGATCTGAAGGAGGAGATAAGGAAACTGGAGGATCACGAACATCTTCTGGACACTCATACTCGGTGGATTCAGCAGAGtataaagaatatagaaaatgatataataaataggaaatatgcatatattactTATGAGGATGTCAAGGAGAACTTTCTAGATCAATTTGTACTAGGAATTCAAGCTCCTCCAGACACTGAATTATCAGTACCAAACGTTTTGAAgACTGTCATACAAGACGATGCGGTGATAAGCTATAACATGTACTTGAAGAGTAATTCGGGAGAAATTAAAGTGTACATGGTTCAACCCGAACTAGCTAAAACTTATGATAATAAAGTGTTAGAAATGAGGTTAAAAGAAGAATCAAAAGGCACAAAGCGTGGAAATGAAGAggatgaaaaaaaagaggaagaagtCATTGTTAAACCAAAGAGAAAAGTTGGCAGacCACCAAAAAGCAAACCACAGAGTCCAATATTAACCGAtgacgaggaagaagaagatcAAGAATTGATAGAAGCCAAGATAGTTCTGCGTGACGTGAGCACTGCagatatCTTACAAACGAATTTGGAGTTACTCGACCAATTCTATTCCGATTttTGTGGACCATTGGTGAGATTAAGTCCACCCCCAGGAGAGAAAGATTATCACTTCAATCTTAGTGAGAATGAAGGTGTTTGTGATTTATTCGACATTACGACATAA
- Protein Sequence
- MADNQQSRFEKSLGLLTTRFVTLLQKAKDGVLDLKIAADLLEVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGAGPGCNTQEVGEKLTDLKEEIRKLEDHEHLLDTHTRWIQQSIKNIENDIINRKYAYITYEDVKENFLDQFVLGIQAPPDTELSVPNVLKTVIQDDAVISYNMYLKSNSGEIKVYMVQPELAKTYDNKVLEMRLKEESKGTKRGNEEDEKKEEEVIVKPKRKVGRPPKSKPQSPILTDDEEEEDQELIEAKIVLRDVSTADILQTNLELLDQFYSDFCGPLVRLSPPPGEKDYHFNLSENEGVCDLFDITT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00868563; iTF_00729857; iTF_00730530; iTF_00264803; iTF_00264069; iTF_01077266; iTF_00279764; iTF_00867189; iTF_00109622; iTF_01245017; iTF_00867934; iTF_00729088; iTF_01407959; iTF_01408850; iTF_01268065; iTF_01266691; iTF_01268811; iTF_01267341; iTF_01270991; iTF_01269591; iTF_01270299; iTF_01087011; iTF_00769426; iTF_00452384; iTF_00125701; iTF_00127238; iTF_00127977; iTF_00129519; iTF_00128756; iTF_00126493; iTF_01520023; iTF_01421351; iTF_01423436; iTF_01422028; iTF_01422716; iTF_01015600; iTF_01355105; iTF_01405482; iTF_01354414; iTF_01407022; iTF_00385071; iTF_00765334; iTF_00884849; iTF_00773588; iTF_00863755; iTF_01228185; iTF_01228815; iTF_01523161; iTF_00182438; iTF_01475981; iTF_00015185; iTF_01476726; iTF_01261661; iTF_00181770; iTF_00417355; iTF_01477369; iTF_00181114; iTF_00898555;
- 90% Identity
- iTF_00868563;
- 80% Identity
- -