Arud023992.1
Basic Information
- Insect
- Aphaenogaster rudis
- Gene Symbol
- E2F5
- Assembly
- GCA_003063815.1
- Location
- NJRL01000186.1:161531-163689[-]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.6e-30 6.9e-26 90.2 0.2 2 65 10 74 9 74 0.98 2 3 1.2 9.8e+03 -3.2 0.0 14 38 86 110 80 113 0.54 3 3 0.49 3.9e+03 -1.9 0.0 13 30 162 178 155 180 0.67
Sequence Information
- Coding Sequence
- ATGGCAGATAATCAGCAGAGTCGATTTGAGAAGTCACTCGGACTGCTGACCACCCGCTTCGTGTCCCTGCTCCAGAAGGCGAAGGACGGCGTGTTGGATTTGAAAGTCGCCGCGGACCTTCTGGAGGTACGACAGAAACGGCGCATCTACGACATCACAAACGTCCTCGAGGGTATCGGCCTCATAGAGAAGAAGAGCAAGAACAGCATCCAATGGAAGGGTGCGGGACCTGGCTGCAACACTCAGGAGGTCGGCGAGAAGCTGACGGACCTGAAGGAGGAGATCAGCAAACTGGAGGATCACGAGCAGCTACTGGACACTCATACCCGATGGATTCAGCAGAGTATAAAGAATATCGagaatgatattataaataggAAATACGCGTACATTACATACGAAGATGTAAAGGAGAACTTTGCGGATCAATTTGTACTAACGGTACAGGGGCCTCCGGACACGGAATTGACAGTACCAAATGTCTTGAAGACTGTCATACAGGAGGATGGAGTGATAAATTATAACATGATCCTCAAAAGTAATACAGGagaaattaaagtatacatGGTTCAACCTGAGCTAGCTAAAACTTATGATAATAAAGTGTTAGAAATGAGATTACAAGAAGAGTCTAAGGGTATAAAGCGTGGAAACGAGGAGGAtgagaagaaagaggaggaggttATTGTTAAACCAAAGAGGAAAGTTGGCAGACCACCAAAAAACAGTACTAAACCGGATCCGGTATTAACTgacgatgaagaagaagaagattcgGAATTAATAGAAGCTAAGATAGTTCTGCGTGACGTAAGCACTACAGatattgTTCAAAGAGAATTGGAATTCCTTGATCAATTCTATTCCGATTTTTGCGGACCATTAATGAGATTAAGTCCACCTCCCGGGGAGAAAGATTACCATTTTAATCTTGGTGAGAACGAGGGTGTTTGTGATTTATTTGACATTACGACGTAA
- Protein Sequence
- MADNQQSRFEKSLGLLTTRFVSLLQKAKDGVLDLKVAADLLEVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGAGPGCNTQEVGEKLTDLKEEISKLEDHEQLLDTHTRWIQQSIKNIENDIINRKYAYITYEDVKENFADQFVLTVQGPPDTELTVPNVLKTVIQEDGVINYNMILKSNTGEIKVYMVQPELAKTYDNKVLEMRLQEESKGIKRGNEEDEKKEEEVIVKPKRKVGRPPKNSTKPDPVLTDDEEEEDSELIEAKIVLRDVSTTDIVQRELEFLDQFYSDFCGPLMRLSPPPGEKDYHFNLGENEGVCDLFDITT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01254594;
- 90% Identity
- iTF_00385071;
- 80% Identity
- iTF_00125701;