Pjap010973.1
Basic Information
- Insect
- Popillia japonica
- Gene Symbol
- -
- Assembly
- GCA_004785975.1
- Location
- SMLS01050040.1:11327-16844[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.6 1.4e+03 0.8 0.1 3 10 6 13 5 19 0.85 2 17 0.0039 0.58 11.5 0.1 1 23 387 410 387 410 0.98 3 17 0.082 12 7.3 1.1 2 21 417 436 416 437 0.93 4 17 0.14 21 6.6 0.2 1 23 450 472 450 472 0.96 5 17 1.6 2.4e+02 3.3 1.1 1 23 505 529 505 529 0.94 6 17 0.00045 0.068 14.4 4.6 1 23 532 555 532 555 0.96 7 17 0.03 4.5 8.7 4.6 2 23 562 584 561 584 0.94 8 17 0.01 1.6 10.1 4.0 1 21 688 708 688 709 0.95 9 17 0.00048 0.071 14.4 2.2 2 23 721 743 720 743 0.94 10 17 0.025 3.7 9.0 2.1 1 23 746 769 746 769 0.96 11 17 2.9 4.4e+02 2.4 0.2 1 23 799 822 799 822 0.93 12 17 0.41 61 5.1 0.4 2 23 829 851 828 851 0.94 13 17 0.056 8.5 7.8 1.0 2 23 860 882 859 882 0.95 14 17 0.0013 0.19 13.0 0.2 2 23 888 910 887 910 0.95 15 17 8.6 1.3e+03 1.0 2.1 3 23 1069 1090 1068 1090 0.94 16 17 0.94 1.4e+02 4.0 0.2 2 23 1097 1119 1096 1119 0.92 17 17 0.18 27 6.2 0.9 1 23 1132 1154 1132 1154 0.96
Sequence Information
- Coding Sequence
- atggaaacaaaactcTGCAGAATATGTGGAAAGTCTACCGGTAACCACTTGAACATATTCAAAACTGAAGGATTGAAAGTGAAATTGGAAACTTGTCTTCCAATAATTGTTTCTCAACATTGTCTGCTACCTGAAACGATATGTAAAGATTGTGCGGAGAATGTAGATAATTTCTACATATTCATCAAGAACTGTCTGGAGAACTTAATTATCTTAGAATCGCAGTACGACATACACGAATCTTGCCTGAAGAGCAAACGAAAATGCGATAAAGGCACTACGGCTGACAAAATCGCAAAGACTGAGAAGGGTATCCAAACGGACGAGGTTAGCTTTCTAGAATCGTACAAAGAATCAATCCTAAATCTCCCAAAGACGTTAGAAGAGGCGGAACGAACCTTGAACGATAATGATTATCTAACATACCTTCCTAAATTCGTCAACGGTAAGGATCGTCAAATTAGTTTGGTGAGTTACGATGTGTCGGACGATTCAAACTCTGAAAACGAGGAGGTGACGGCTTTCGATAAGAAAGGTGTGTTGCTGAAACATAGTGAAAGTAATGGTGTGACGCAACGCTTGGACAtcgataattttctaattaacaaGCAGTATTTTGACAATCAAGAAAACCAGTTGATTAATGAAATTACGCAACGGATAAACCAAAAGAGAAAATGTGATGAAATATTGCCTTATCGAACAAAAATTTGCAAGTACGACATTAATAGTCGACGGAAAAATAGACAGCCTAAGAAAATCAGTAATAGGAGTATAGAAGATATacctatttttaataaatggaGTCAAGATTTTACGGACAGTGCAGAGGATGATGCTGCAACGggtgataataaaatattaaatagcaATCGACAGGAGGACAAACATGAAAACGCGAGCATTGTTCAAATTCTACCGCAATTGTGTTTACTGTGCGAATCTCAATTCCCCACACCGATTCAATTGGCTGGACATGTATTCGAAACGCATGGTATCGATATGGCACAAATCCTCGCCTCGGAACCTGTGctggaaaagaagaagaaaataccAAATCTGGTAAAGATTACAGATTTGAAGAATAAAAATGATGTGTCAGAACCGCCGCAACTCAATATGGATCTCTCGGAAGAACCCCCAACACTCCAACCGAGCTACGTTTGTCCATTATGTCCAGCACTCCTTACGAACAAAACAGATCTCTACACCCATCTCCGCGTCAAACACCCCAAGCAAGCGTCCTTAACATGCGGAATGTGCTCGCACATCTGTACATCAAATGCAACTCTAACCACACATCTGGAAACCTGCATGAAACAACACCCCAACCTTACATCATCGAAATACATATGCAAAATCTGCCGCTACAGCGATGACAATTCCAAAACGCTCGAAAACCACATTGTGGTGCATGATTTCATCCTGCAGCACACTCGAAAACAATCGAAGATCTTCGATCCATGCGATTACATTGAAATTAATCCAGAATCGGAAAGCTCACCAAAGATTTATACGTGTACAGAGTGTACCGATGGGGTATTCGatgattttaaagaatttagcACCCATCGCAGATCTCAACACCAAATCTTCCATTGTGATCTCTGTAATAAGTTCTACGGTAGGAACTCTCATCTGTGGAAGCACGTGAATAGGTTGCACAAAGGACATCCGAGTATTACGTGCCAGTTGTGTCATAAAACGAGCGCTTCGAAATACCATTTATCGCAGCATTTTAGTAAGATACACAGTGCGAAGTTGTTCAATTTGAAACCTGATCCTACGAGTGAATACGAGGATTTTATGAAGCAGAAATTTCAAGGTTTCGATTTTCAATCTGTGAAGCAAAGTTTTATGCGGCAGGAGTTATTGAAGCAGGAGCAGAAGGATTCGTTTAGCGAGGTGTcggaacaagaagaagaaggtgCTAAATTAGATGACGAAGAGAGGAATTCCGAGAGAGAAAAGAAGCAAAACCCACCAAAAGAAATCGATTCATCATCTAACCTCTACACGAACATCATCACAAATTACACCCCACCACAGAATAACGGCGAATTCAAGTGTCCCAAATGTCTGAAAGGCTTCCACAAGAAGAACTTGCTGAAGAAGCACAAGAAAAACTGCCGGCCTCGGCTCCAAAAGGATCTCCTTACACGTTGCAAAACATGCTCGCGGATCTTTAAAGATAGACAAAGCCTTACGAAGCATTTAATCAATTATCACTCCGAATATGTTTGCGAAATTTGCAGCCAGAAGTTTCAGAGCAAATGCGAGATTGTCTCCCACATTCGTTTCACCCATCCGAATTGCCATCTATTTTGCTCCTGCGGCAATATTCTCAGGAATAAGGAGGATATGAGGTTGCACAAGCAAGATCACTGGAATTCCTTCATTTGCCAGTTCTGCGCGGATAGCCTCCCAACGAAGATTAAATTGAAGATGCACATATTGAGTTTGCATCGGAAGATATTAAGCTTGAGTTGCGGGATCTGTTTGAAACTGTTCGAGACGCAGCATATATTGAGGGATCACGTCAGATTAGTGCACAaggaACACCTGCTCCCGCTTACATCTTGCACAGTTTGCGGGAAAAACTATGGTTCGAAGTGGAAGACTTTCGATCACTTGAATAAATCTCACGGACGCATTTTTAAGCCTTGCAAAGTCTGTCTTGAGGTATTCGATTCTGAGGAACAGCTGCAAAGGCACTACGATACCATGCACACAAAATTCGCACAAGCAAAAGCCTCGATTCAAAATAATCCACCGCTAAATGAGTTTACCAGTATTAAAAAGGAGTTGTGCGAAAGTGATTTCGAACAGAATTATGAGAACGAAGACAAGAATAGTAACAACAGCGATGTGGACGATGCAGAAAACTACCCCGGTTACCAAAATATAAACCAAAGCGATTGCGAAGACCGTACGACTGGGTCTAAGACGGAATTCCAAACGATGGACGAGAATAAGATCTCTTTATTAGAAAAACGATTATTAGGGAAAAAATTACCTCCTGAGGAGCAGAAAAAATCAGGGAAGAAGAACAAGAACGACAAAAAAGTTACCAAATCCGAGTATTCGATGATGTTTCCTACGAGTATTAAGCAGAGAGATTTGGAGGACATGGATTATAATCAGAGTCCTCTTCAGAATAGTTCGAAAAGGACTGTGTACGTGAATAGTAATGATCCTTCTTTGTgtgaaatttgtttgaaaacgTGGCCTGCTAAGAAGCATTTGTGGCAGCATTATATAAGGTGTCACAAGACTGTCGCTGCTACTGTTTGCGGGATTTGCTTGAAAGCGAATGAGAGTTACGAGTCGTTGCAGAAACATTTGAAGGAGAATCACCCGACGTTGCTGCACGGGCAAGGGTTTGGATCGAATTTCATCTGTAGGATATGTGGAAGATACCATAACGCTAGCTCGAAACTGAAGCTGCATATGGCGATACACGAGAATTTCGACTGGAAGATCCTAGAATCATTCGAGAACACCAAAGCGGAACACCCCGAAATAAAAACGGAAAACTCCATGAATAACGGCTACGACGTGAAGGCCGAAGACgaagaggaggaggaggaagaagaCGATTGCGAGGAACAAAAGACTCAACTCCAATCCGACATCAATTTCGAGAGCCTCATCGAAGAGGTGGAATGCAGTTCGGATTCGGAGAACGATTCCGAAGACGACGACCAGCGGGGTCAAAACGAGGAGACCTCCACTAGCGATCCGAGCGATACGGACGACGTATCGGAGGAGAACTCGCTCGAATCCCAGATGCTCCAGAATATGCTAATCGAAAAGACGCTGTTGCAGAAACAGGTCGAGGCTATTAAGAATAACAACAGCGGATCGAATTATAAGACTGAACCCCCGAACAAAATCATTCCGTACGATTCCGCCGAGAATGGGATTAAACAGGAGACGAGCTCCGAAAGCGAGGATTCGAATTCGTCGAGTACCGAACACGAGAACGAGTACAAATCGGAGATGAAGAGCGAGAATTGTTCGTCGGACGAGGAGGATGAGTCTCAGGTATCGGTGGTTAGCGAGGATGAAGAGGAGGACGATGAGAATCGGGAGGATTCGAACGATTCGTCGCGGAATGTTTTCGAGAGGAAACCGGAGGAGTTGGATTCCGCTATCAAGTCGATTAGTTACGAGGAGGTCGATGTCACGGACGAGCAGGTTAGCGATCAGTTTTGCGAGTTGCAAGCGCAGAATTTGAATCCGCATGAAATTCAAAGTGCCGTTGATAGTATTTTGTAA
- Protein Sequence
- METKLCRICGKSTGNHLNIFKTEGLKVKLETCLPIIVSQHCLLPETICKDCAENVDNFYIFIKNCLENLIILESQYDIHESCLKSKRKCDKGTTADKIAKTEKGIQTDEVSFLESYKESILNLPKTLEEAERTLNDNDYLTYLPKFVNGKDRQISLVSYDVSDDSNSENEEVTAFDKKGVLLKHSESNGVTQRLDIDNFLINKQYFDNQENQLINEITQRINQKRKCDEILPYRTKICKYDINSRRKNRQPKKISNRSIEDIPIFNKWSQDFTDSAEDDAATGDNKILNSNRQEDKHENASIVQILPQLCLLCESQFPTPIQLAGHVFETHGIDMAQILASEPVLEKKKKIPNLVKITDLKNKNDVSEPPQLNMDLSEEPPTLQPSYVCPLCPALLTNKTDLYTHLRVKHPKQASLTCGMCSHICTSNATLTTHLETCMKQHPNLTSSKYICKICRYSDDNSKTLENHIVVHDFILQHTRKQSKIFDPCDYIEINPESESSPKIYTCTECTDGVFDDFKEFSTHRRSQHQIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQLCHKTSASKYHLSQHFSKIHSAKLFNLKPDPTSEYEDFMKQKFQGFDFQSVKQSFMRQELLKQEQKDSFSEVSEQEEEGAKLDDEERNSEREKKQNPPKEIDSSSNLYTNIITNYTPPQNNGEFKCPKCLKGFHKKNLLKKHKKNCRPRLQKDLLTRCKTCSRIFKDRQSLTKHLINYHSEYVCEICSQKFQSKCEIVSHIRFTHPNCHLFCSCGNILRNKEDMRLHKQDHWNSFICQFCADSLPTKIKLKMHILSLHRKILSLSCGICLKLFETQHILRDHVRLVHKEHLLPLTSCTVCGKNYGSKWKTFDHLNKSHGRIFKPCKVCLEVFDSEEQLQRHYDTMHTKFAQAKASIQNNPPLNEFTSIKKELCESDFEQNYENEDKNSNNSDVDDAENYPGYQNINQSDCEDRTTGSKTEFQTMDENKISLLEKRLLGKKLPPEEQKKSGKKNKNDKKVTKSEYSMMFPTSIKQRDLEDMDYNQSPLQNSSKRTVYVNSNDPSLCEICLKTWPAKKHLWQHYIRCHKTVAATVCGICLKANESYESLQKHLKENHPTLLHGQGFGSNFICRICGRYHNASSKLKLHMAIHENFDWKILESFENTKAEHPEIKTENSMNNGYDVKAEDEEEEEEEDDCEEQKTQLQSDINFESLIEEVECSSDSENDSEDDDQRGQNEETSTSDPSDTDDVSEENSLESQMLQNMLIEKTLLQKQVEAIKNNNSGSNYKTEPPNKIIPYDSAENGIKQETSSESEDSNSSSTEHENEYKSEMKSENCSSDEEDESQVSVVSEDEEEDDENREDSNDSSRNVFERKPEELDSAIKSISYEEVDVTDEQVSDQFCELQAQNLNPHEIQSAVDSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121196; iTF_00956661; iTF_00627835; iTF_00626705; iTF_01499251;
- 90% Identity
- -
- 80% Identity
- -