Tdic007877.1
Basic Information
- Insect
- Trypoxylus dichotomus
- Gene Symbol
- -
- Assembly
- GCA_014905495.1
- Location
- BNES01000022.1:4771173-4786906[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8 7.1e+02 1.5 0.1 3 12 6 15 5 20 0.85 2 17 6.5 5.8e+02 1.7 0.0 3 22 309 328 308 330 0.87 3 17 0.0042 0.37 11.8 0.1 1 23 387 410 387 410 0.97 4 17 4.1 3.6e+02 2.4 0.2 2 21 417 436 416 437 0.90 5 17 0.13 12 7.1 0.2 1 23 450 472 450 472 0.96 6 17 0.91 81 4.4 0.8 1 23 505 529 505 529 0.93 7 17 0.00062 0.055 14.4 4.6 1 23 532 555 532 555 0.96 8 17 0.021 1.9 9.6 3.8 2 23 562 584 561 584 0.94 9 17 0.014 1.3 10.1 4.0 1 21 689 709 689 710 0.95 10 17 0.00064 0.057 14.3 2.2 2 23 722 744 721 744 0.94 11 17 0.033 3 9.0 2.1 1 23 747 770 747 770 0.96 12 17 3.9 3.5e+02 2.4 0.2 1 23 800 823 800 823 0.93 13 17 0.55 49 5.1 0.4 2 23 830 852 829 852 0.94 14 17 0.076 6.8 7.8 1.0 2 23 861 883 860 883 0.95 15 17 0.026 2.3 9.3 0.2 3 23 890 911 888 911 0.94 16 17 0.92 82 4.4 0.1 2 23 1100 1122 1099 1122 0.93 17 17 0.24 22 6.2 0.9 1 23 1135 1157 1135 1157 0.96
Sequence Information
- Coding Sequence
- ATGGAAACGAAACTCTGCAGAATATGTGGGAAGTCTACTGATAACCACTTAAACATATTCAAAACAGAAgggttgaaaataaaattggaaaccTGTCTTCCAATAGTCGTTTCTCAACATTGTCTCCTGCCTGACACAATATGTAAAGAGTGTACGGATAATGTCGAAAACTTCTATACGTTCATCAAAAATTgtcttgaaaatttaattatattagaatCGCAGTATGATATACACGAATCCTGTTTGAAGAGCAAACGGAGATTTGAAAAGGGCACTATCATCGATAGAATTCCAAAGACTGAAAGAGGCATTCAAACCGATGAGATTAGCTTCATAGAGTCATATAAAGAGTCCATATTAAATTTCCCAAAGACATTAGAGGAGGTGGAAAAGACTTTGAACCTGTGTCATGTCGATTACTCACAATATTTTCCCAAACCAGACAataaggatcatcgagtaagtTTGGTTAGTTACGATGTGTCGGAAGAATCAAATTCCGAAACTGAAGAATCAAAACCGGTTACAGTCCGGAACGAGGTAGCGTTTTTGACTAACGAGAAAAATAGAAGTACGATACAGCATTTCGACgttgataattttctcatcaataaacaatattttgacAATCAAGAAAATCGGCTAATTACCCAGAGAttaaaccaaaaaagaaaatgtgatgAAATATTGCCTTATCGAACGAAAATATGCAAATTCGACATTAATAACCGACGAAAGAATAGACAGCCTAAGAAAATCAGCAATAAAAGTATAGAGGACATCCCTATTTTTAATAAGTGGAACCAAGATATTGCAAACGGTATAGAAAATATTGGTGTGACAAGTGATAAAGTGTTGAGTGGTGCACTGCAGGAGGAACGACATGAAAACGCGAATACCATGCAAAGTTTACCGCAGATATGCCTGCTCTGCGAGTCTCCATTTCCAACGCCGGCCGAGCTGGCCGGTCATGTGTTCGAGACGCACGGCATCGACATGGCACAGATCCTCGCCTCGGAACCTGTCatggaaaagaagaagaaaatccCGAACCTGGTGAAGATCGCTGATTTGAAGGGCAAAAGCGAGATCTCAGAACCACCACATCCGGTGAACATGGACACCTCCGAGGAACCTCCGACGTTGCAACCAAGCTACGCGTGCCCGATATGTCCAGCCTTACTAACGAACAAAACCGATCTCTACACCCATCTCCGTGTCAAACACGCCAAACAAGCGTCCTTAATTTGCGGACTATGTACTCAAACCTGCAACTCGGGCGTTTCCCTTTCGTCTCACCTCGAAACCTGCGCGAAGCAACACCCTTCGGCCGTCTCCGCCAAATACATCTGCAAAATCTGCCGGTACAGCGACGACAACTCGAAATCGCTCGAGAATCACATCGTCGTCCACGATTTCATCCTCCAATACTGCCGGAAGCAGTCGAAGATCTTCGATCCGAGCGACTATATCGAGATCAACCCCAGTTCGGAAAGCGCGCCGAAGATCTACACGTGCAACGAGTGCACACAGGGCGTTTTCGATGATTTCAAAGAGTTCAGCGCGCATCGCAGGTCCCAGCATCAGATCTTCCACTGCGATCTCTGCAATAAGTTCTACGGTAGGAACTCGCACCTGTGGAAGCACGTGAATCGATTACATAAAGGGCATCCGAGCATCACGTGCCAGTTATGCCACAAGACCAGCGCTTCGAAGTACCACCTCGCGCAACATTTTAGTAAGATTCACAGTGCGAAGCTGTTCAATTCCAAGCCTGATCCTACGAATGAATACGAAGACTTTATGAAGCAGAAGTTCCAAGGGTTTGATTTCCAATCGGTGAAGCAGAGCTTCATGCGACAGGAAATGTTGAAGCAGGAACAGAAGGATTCGTTTAGTGAGGAGATCTCGGAACAGGAAGAGGAAAATGATAAAGCGGATGATGATGAGAAGAATTCAGAAaagGGAAAGGAACAGAATCCACCAAAAGAAATCGATTCATCCTCGAACCTCTACACGAACATAATAACCAACTACACTCCGCCGCAGAACAACGGCGAATTTAAGTGCCCGAAATGCCTCAAAGGATTCCACAAGAAGAACCTGCTCAAAAAGCACAAGAAGAACTGCAGGCCGCGTCTACAGAAAGATCTCCTCACCCGCTGCAAGACCTGCTCGCGGATCTTCAAAGACAGACAAAGCCTGACGAAGCATCTCATCAACTACCATTCCGAGTATGTTTGCGAAATATGCAGTCAAAAGTTCCAAAGTAAATGCGAGATCGTCTCCCACATCCGCTTCACGCATCCGAACTGCCATCTCTTCTGTTCGTGCGGGAATATCTTGAGGAACAAGGAAGATCTACGGTTGCACAAGCAGGACCATTGGAATTCGTTCATCTGCCAGTTCTGCGCCGATAGTTTACCTACGAAGATCAAGCTGAAGATGCATATCTTGAGCTTGCATCGGAAGATTTTAAGTTTGAGTTGCGGGATCTGTCTGAAGCTGTTCGAAACTCAGCATATACTGAGGGATCATGTTCGATTGGTGCATAAGGAACATCTTCTACCACTCACATCCTGCACGGTCTGCGGTAAAAACTACGGTTCCAAGTGGAAGACCTTCGACCATCTCAACAAATCCCACGGTCGAATCTTCAAACCTTGCAAGGCCTGCTTAGAGGTCTTCGATTCCGAGGAGCAACTCCAAAAGCACTACGACACCATGCACATAACGTTCTCCCAATCAAAGGGTTCCATCCAGAACGCCCCTTCGAACGAATTCGGTAGCATCAAGAAGGAGCTCTGCGAAAGCGATTTCGAGCATAACTACGAGAACGAGGATAAGAACAGCAACAGCGACGCGGAGGACCCCGAAAATTACTCCGGTTACCAGAACACGACCCAGAGCGATTACGACGATCGAACGACCGGTTCTAAGGCGGATTATTCCAACGTCATGGACGACGGGAAGATCTCGCTGCTGGAGAAGCGATTATTAGGGAAGAAACTACCGTCGGAAGATCAGAAGAAATTCGCTAGAAAGATCAAAGACGAGAAGAATGTGGATGCGAAATCGGAATATTCCATGATGTTCCCGGCGAATAATACGAAACAAACGAGGGAGTTCGAGGAGATCGAGAACAACCAGAGCCCTCTGCAGAATAGTTCGAAAAGAACCGTGTACGTCAACAGTAACGATCCTTCCCTCTGCGAGATCTGCTTGAAGACGTGGCCCGCTAAGAAACACCTGTGGCAGCACTACATTCGATGTCATAAAACGGTCGCGGCTACCGTTTGTGGTATCTGCTTGAAAGCAAATGAGAGTTATGAAGCCTTGCAGAAGCATCTGAGGGAGAATCACCCGACTTTACTGCACGGGCAAGGTTTCGGATCGAATTTTATCTGTAGAATATGTGGAAGATATCACAACGCCAGCTCAAAGCTCAAGTTACACATGGCGATACACGAAAACTTCGATTGGAAAATACTAGAATCCTTTGAGAACGTCAAAACCGAGCATTCCGAAATCAAAACAGAGAATTTAATGAACAACGGTTACGACGTTAAAGTGGAAGAGGAAGAAGACGAAGCGGAGGAGGACAAGATGCAGCAGATACAATCCGAGATCAATTTCGAAAGCCTCATCGAAGAAGTCGAGTGCAGCTCCGAGTCCGAGAACGAGAACGTGAACGATTCGGAGGACGAGGAGGAGGATCAACGCGGACAGAACGAGGACACATCGACGAGCGAACCAAGCGATACCGACGACGTCTCCGAGGAGAACTCGTTGGAATCGCGGATGCTCCAGAACATGCTTATCGAGAAGAACCTCCTGCAGAAGCAAGTCGACGCGATCAAGAACAGTAACGGCGGAACAACCTATAAGACTGAAAAACAGAACAAAATCATTCCGTACGATGCCGCCGAGAACGGGCTCAAGCAGGAGACCAGCTCCGAGACGGAGGATTCGAATTCGTCCAGCAGCGAGCACGAGAACGAGAACGATTACAAGTCCGAGATTAAGAGCGAGAACGTTTCCTCGGAGGACGAGGACGAATCACAGATCTCGATCGCTAGCGAGGACGACGAGGAAGAGGAGGATAATCAGGACGATTCGAACGATTCCTCGAGGAACGTTTTCGAGAGAAAACCGGAAGAATTGGATTCCGCGATCAAGTCGATCAGTTACGAACAGGTGGATATCAAGGACGAACAGATAGGCGATCAATATTGCGAGCTGCAAGCACAAAACCTGAACCCGCACGAGATACAGAGTGCCGTCGATAGTATTTTGTAG
- Protein Sequence
- METKLCRICGKSTDNHLNIFKTEGLKIKLETCLPIVVSQHCLLPDTICKECTDNVENFYTFIKNCLENLIILESQYDIHESCLKSKRRFEKGTIIDRIPKTERGIQTDEISFIESYKESILNFPKTLEEVEKTLNLCHVDYSQYFPKPDNKDHRVSLVSYDVSEESNSETEESKPVTVRNEVAFLTNEKNRSTIQHFDVDNFLINKQYFDNQENRLITQRLNQKRKCDEILPYRTKICKFDINNRRKNRQPKKISNKSIEDIPIFNKWNQDIANGIENIGVTSDKVLSGALQEERHENANTMQSLPQICLLCESPFPTPAELAGHVFETHGIDMAQILASEPVMEKKKKIPNLVKIADLKGKSEISEPPHPVNMDTSEEPPTLQPSYACPICPALLTNKTDLYTHLRVKHAKQASLICGLCTQTCNSGVSLSSHLETCAKQHPSAVSAKYICKICRYSDDNSKSLENHIVVHDFILQYCRKQSKIFDPSDYIEINPSSESAPKIYTCNECTQGVFDDFKEFSAHRRSQHQIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQLCHKTSASKYHLAQHFSKIHSAKLFNSKPDPTNEYEDFMKQKFQGFDFQSVKQSFMRQEMLKQEQKDSFSEEISEQEEENDKADDDEKNSEKGKEQNPPKEIDSSSNLYTNIITNYTPPQNNGEFKCPKCLKGFHKKNLLKKHKKNCRPRLQKDLLTRCKTCSRIFKDRQSLTKHLINYHSEYVCEICSQKFQSKCEIVSHIRFTHPNCHLFCSCGNILRNKEDLRLHKQDHWNSFICQFCADSLPTKIKLKMHILSLHRKILSLSCGICLKLFETQHILRDHVRLVHKEHLLPLTSCTVCGKNYGSKWKTFDHLNKSHGRIFKPCKACLEVFDSEEQLQKHYDTMHITFSQSKGSIQNAPSNEFGSIKKELCESDFEHNYENEDKNSNSDAEDPENYSGYQNTTQSDYDDRTTGSKADYSNVMDDGKISLLEKRLLGKKLPSEDQKKFARKIKDEKNVDAKSEYSMMFPANNTKQTREFEEIENNQSPLQNSSKRTVYVNSNDPSLCEICLKTWPAKKHLWQHYIRCHKTVAATVCGICLKANESYEALQKHLRENHPTLLHGQGFGSNFICRICGRYHNASSKLKLHMAIHENFDWKILESFENVKTEHSEIKTENLMNNGYDVKVEEEEDEAEEDKMQQIQSEINFESLIEEVECSSESENENVNDSEDEEEDQRGQNEDTSTSEPSDTDDVSEENSLESRMLQNMLIEKNLLQKQVDAIKNSNGGTTYKTEKQNKIIPYDAAENGLKQETSSETEDSNSSSSEHENENDYKSEIKSENVSSEDEDESQISIASEDDEEEEDNQDDSNDSSRNVFERKPEELDSAIKSISYEQVDIKDEQIGDQYCELQAQNLNPHEIQSAVDSIL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01253147;
- 90% Identity
- -
- 80% Identity
- -