Pdom007187.1
Basic Information
- Insect
- Polistes dominula
- Gene Symbol
- -
- Assembly
- GCA_001465965.1
- Location
- NW:722694-726420[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.2e-05 0.00074 19.0 4.3 2 23 280 302 279 302 0.96 2 12 0.00078 0.047 13.3 1.7 1 23 308 330 308 330 0.97 3 12 2e-05 0.0012 18.3 0.6 2 23 340 361 339 361 0.97 4 12 0.0091 0.54 10.0 8.3 1 23 465 487 465 487 0.98 5 12 0.00028 0.017 14.7 1.0 1 22 492 513 492 516 0.90 6 12 3.2e-06 0.00019 20.8 0.9 1 23 555 578 555 578 0.95 7 12 2e-06 0.00012 21.5 1.3 1 23 612 634 612 634 0.98 8 12 0.00012 0.0074 15.8 4.0 1 23 648 670 648 670 0.96 9 12 0.00012 0.007 15.9 4.7 1 23 676 698 676 698 0.98 10 12 0.001 0.062 12.9 3.2 1 23 704 726 704 726 0.98 11 12 3.5e-05 0.0021 17.5 6.5 1 23 732 754 732 754 0.98 12 12 0.00016 0.0098 15.4 0.3 1 21 760 780 760 781 0.93
Sequence Information
- Coding Sequence
- atgacaaaccaagataattattatttatgccgTGTTTGTCTATCGTCGAGCAACGACAATCAACCAATCTTTTCCATCGAGGAAAATTCTACGAAAGATAAAAGCGTTCACGATTTGTCCCAAAAGTTATGGCTATGCGGAGGTATCGAGGTTGCCGAGGACGACGGATTACCCAagcatatttgtataaaatgcaTTGTCAAAGTCAATGCAGCTCACCAACTCAGAGAACAATGTCAACGAGCGGATGTCAAGTTGAGACAATTATATGGCAAAGCGATAAAGAAAGCTGACACTTTAAAAgaTCAATATTGTCAAACAGAAGAACACTTTTCACTTGTAacgaaagaagagaataattattcttttatacgcTACCACCAAGGTGTTGCTTCTCTTCCAGATGAAAAAAGTAGCGAAACGAGTAGCGAAAAGAGTCGCGACAAAAGTCGCGACAAAAGTAGCAATGTCCGAATTTTGAAAGAATCCGATGATGGTAATATCAAGACTagcaatgaaataatattgtcagataatgatgatgatgatgatgatgatgatgatgataataataaattagaacgATTGACGGACGAGGTGGCAGATCCGGTGCCTGTTGTTAAAAGAGAAGCATATCGTACGAGAAGATTGACGATGTTTAAAAGAGTTACCTCtatggaaaatttgaaaaatcatagagaaagacaaagacagtatataaaaaaaaatggaaatacgAAATATGACAATGGGGAAAAGGATGTGCttttaaatgtagaaaatgTGTGTAATAAGGTAGTTAGAGTTTCTTCCGCTACGCGTTCCAATTTAAATCTCAAATGTACTCAATGCAACAGATGTTATTCCAGTAAGAAATCCTTAGAGAGGCATATTTTAACAACTCATAATAACGAAGCTAAATTTCAATGCCAAAAGTGTAAGAAAGAATTCTTTCAAATCGATCAACTACTCCAACACGGTAAACTTCACAGATCTAATGATAAATCAAAGTTAGTACCgtgtaaaatatgtaataaaagttttaGGAAAACTGATACTATGGTACGACATTTGAATGTTCACAAAAGAGTCAATCCCAAGGAAGTATTTTCCATACTGAAGGAAATTAGGGATAGAAGGAAATTGGAGAACAACGTGCAATCCTTAGAAATGAATAATCGCTCTGTAGAAGATGAACATTTGGATGATCGAAAGGCAGACGTTGGATGGCCATTGGATGGCCACGATAATAATGGTCTCGATGATGGGATTGCAAAATTAACAAGCAAACACGTCTCAGACACAGAGgacaaaataacatatttctaTACGTCTAGTTCGGAGTCTAATagcgataataataaatctgatTCTTTCGATGGTATACCAGTTTATCGTTGCAAGCATTGCATCAAATGTTATAGAAAGGAAACATCTCTTAAGCGTCATTTGTTAAAACAcgaggaaagaaaatttgtttgtaatgTTTGCAACATGAAATTTGTTCGTCAAGATAGGCTTAAAAGTCATAGAGATAGATACGGACACGACGAGGATAAAGATTGTTCTATACCTCAAAAACCGCCGGACGACAAGTTAGCtattaagttaattaatagTTGGATTAGAGAAGAATTGGATTCGGATAACGAAGGCAAAGGTTTCCCCTGTGAAATTTGTGGCAAATCCTACGATACGAAAAAATCCTTATTGAAACATCAGACGAATACTCACGAAgtacaagaagaaaattgttgtttaaattgtGGTAAGGAATGTAGTTGCGCAATCAAGTGCAAAGGGaatcgaaaaaataatgaaaaagaaaaaaactttacgTGCTTGGAATGCAataaaagttttgaaaaagaaatcaaattacaAAGACATATGCGAATACACGAACGTACGAAAGAGCAACAAGATTCGAATTTCAAACGATTTTTGTGTCATATTTGCAGTAAAACTTTTCGACAAAATACTGGTCTTATGTTTCATATGAGAACGCATACTGGATATAAACCTCATGTTTGCAAATATTGCGGACGAGGATTTACGTCCAATTCAAATTGCATTAATCACGAGAGAACGCATACCGGCGATAGGCCATTCGTTTGTCACTTTTGTAGCGCTGCTTTTGCTAAATCTTGCACTCTCAAAGCACACATTACTACGCATACCGGCGAAGCTAATTATCATTGTAAAACTTGCGGCAAGTCTTTCAgacgattaaaatatttaaaggaaCATAGATTCACGCATACAGGAGAGAAACCGTATGCCTGCAAAATATGTGGAACAGCTTATAGCCATTCCGGTAGTTTATTCGttcacgaaaaaaaatgtaaggcccagtacaataattatcaaacTATGACGTCTAATCAAAATACTCTAAATTATGGTCAACAATCTGAAggaaatacaatacaatacaatacaaatacaaatacaaatacaaatccGGCCGTTATAGCTCCTAttatttcaacaacaacaacaacaacaacaacaacaacaacactgCCGCAAtctcatataaataatgttaatagtACTTTAGGTTCTCAAGCGAATAAAACTTATATTGACAGCGTGCAAAAAATGAACGCgcatgctgctgctgctgctgccgctGCCGCTACCGCAGCTGTAGTAGGTACGTCTTCGTTGCACGTACATCCTAGTCCGGATATTACAGATGTAGCATCGGCGGTTAGAAATATTGCTATTATAGGACAAGtattttactcttaa
- Protein Sequence
- MTNQDNYYLCRVCLSSSNDNQPIFSIEENSTKDKSVHDLSQKLWLCGGIEVAEDDGLPKHICIKCIVKVNAAHQLREQCQRADVKLRQLYGKAIKKADTLKDQYCQTEEHFSLVTKEENNYSFIRYHQGVASLPDEKSSETSSEKSRDKSRDKSSNVRILKESDDGNIKTSNEIILSDNDDDDDDDDDDNNKLERLTDEVADPVPVVKREAYRTRRLTMFKRVTSMENLKNHRERQRQYIKKNGNTKYDNGEKDVLLNVENVCNKVVRVSSATRSNLNLKCTQCNRCYSSKKSLERHILTTHNNEAKFQCQKCKKEFFQIDQLLQHGKLHRSNDKSKLVPCKICNKSFRKTDTMVRHLNVHKRVNPKEVFSILKEIRDRRKLENNVQSLEMNNRSVEDEHLDDRKADVGWPLDGHDNNGLDDGIAKLTSKHVSDTEDKITYFYTSSSESNSDNNKSDSFDGIPVYRCKHCIKCYRKETSLKRHLLKHEERKFVCNVCNMKFVRQDRLKSHRDRYGHDEDKDCSIPQKPPDDKLAIKLINSWIREELDSDNEGKGFPCEICGKSYDTKKSLLKHQTNTHEVQEENCCLNCGKECSCAIKCKGNRKNNEKEKNFTCLECNKSFEKEIKLQRHMRIHERTKEQQDSNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNYQTMTSNQNTLNYGQQSEGNTIQYNTNTNTNTNPAVIAPIISTTTTTTTTTTTLPQSHINNVNSTLGSQANKTYIDSVQKMNAHAAAAAAAAATAAVVGTSSLHVHPSPDITDVASAVRNIAIIGQVFYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01232551; iTF_01234515; iTF_01233824; iTF_01235193;
- 90% Identity
- -
- 80% Identity
- -