Pcan003929.1
Basic Information
- Insect
- Polistes canadensis
- Gene Symbol
- -
- Assembly
- GCA_001313835.1
- Location
- NW:337076-340392[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.1e-06 0.00038 19.8 4.4 2 23 243 264 242 264 0.97 2 12 0.0019 0.12 12.0 3.1 1 23 269 291 269 291 0.97 3 12 3.2e-05 0.002 17.6 0.4 2 23 301 322 300 322 0.97 4 12 0.0047 0.3 10.7 7.6 1 23 418 440 418 440 0.98 5 12 0.0011 0.068 12.8 1.7 1 22 445 466 445 469 0.90 6 12 2.8e-06 0.00017 20.9 0.9 1 23 508 531 508 531 0.95 7 12 1.7e-06 0.00011 21.6 1.3 1 23 564 586 564 586 0.98 8 12 0.00011 0.0066 15.9 4.0 1 23 600 622 600 622 0.96 9 12 0.0001 0.0063 16.0 4.7 1 23 628 650 628 650 0.98 10 12 0.00089 0.056 13.0 3.2 1 23 656 678 656 678 0.98 11 12 3e-05 0.0019 17.6 6.5 1 23 684 706 684 706 0.98 12 12 0.00014 0.0088 15.6 0.3 1 21 712 732 712 733 0.93
Sequence Information
- Coding Sequence
- atgacaaaccgagataattatttatgccGTGTTTGTCTATCGTCGAGCAACGACAATCAACCTATCTTTTCCATCGAGGACAATTCTACGAAAGATAAGAGCGTCCAGGATTTGTCCGAAAAGTTATGGCTATGCGGAGGTATCGAGGTTGCCGAAGACGACGGATTACCCGAgcatatttgtataaaatgcaTTCTCAAAGTCAATGCAGCTCACGAACTCAGAGAACAGTGTCAACGAGCGGATGTCAAGTTAAGACAACTATATGGCAAAGCGATCAAAAAAGCTGACACTGTCAAagATCAATATTGTCAAACCGAAAAAGAACACTTTCCACTTCTAACGAAAGAAGAGgataattattctcttttacgtTACCAAGATTCTATGTCAGACGACAAAACTAACGTCCAAATCTTGAAAGAATCCGATAGTAATATTAAGACTGGCAATGAAATATTGTCAGATActgataataaattagaacGATCGACGCACGAGGTACCTGTTGTTAAAAGAGAAGCTTATCGTACGAGAAGACTGACGATGTTCAAAAGAGTTACCTCAATGGAAAATTTGAGAAATCacaaagaaagacaaagacagtatataaaaaaaaatgggaatacAAAATACGACAATGGCGAAAAGGATGTGCTTTTAAATGCGGAAAATGCGTGTAATAAGGTAGTCAGAGTTTCCGCTACGCGTTCCAATTTAAATCTCAAATGTACTCAATGCAACAGATGTTATTCCAGTAAAAAATCCTTAGAGAGGCATATTTTAACTCATAACGAAGCAAAATTTCAATGCCAAAAGTGCAACAAACAATTCTTTCATATCGATGAATTACTCCAACACGGTAAACTTCACAGatctaatgaaaaatcaaagttAGTACCgtgtaaaatatgtaataaaagttTTAGGAAAATAGATACTATGGTACGACATTTGAATGTACACAAAAGAGTCAATCCCAAGGAAGTGTTTTCGATACTCAAGGAAATTAGAGATAGAAGGAAATTGGAGAACAACGTGCAAtctttagaaatgaataatcgaTCTATCCTCTCTCTAGAAgatcaaaatttatatgatCGAAAGGCATTGGATAACGGTCTCGACGATGGGATCAAAAAATTAACCAAACAAATATCGGACAcggaggaaaaaataaatcatttctatacGTCCAGTTCCGAGTCTAATAGCGATAATAAATCTGATTCTTTTGATGGCATACCTGTTTATCGTTGCAAGCATTGCATTAAGTGTTATACAAAGGAGACATCTCTTCAGCgtcatttattaaaacacgacgaaagaaaatttgtttgtaatgTTTGCAACATGAAATTCTTTCGTCAAGATAGGCTTAAAAGCCATAGAGACAGATACGGGCACGACGAGGATAAAGATTGTTCTATACCTCAAAAACCGCCGGACGACAAGTTGGCTATTAAGTTAATTAATAGTTGGATTAGAGAAGAATTGGATTCGGATAACGAAGGTAAAGGATTCCCCTGTGAAATTTGTGGTAAATCCTACGATACGAAAAAATCCTTATTGAAACATCAGACGAATACTCACGAAgtacaagaagaaaattgtttcaattGCGGTAAGGAATGTAGTTGCGCCATCAAGTGCAAAGGGAATCGAAAAAatagtgaaaaagagaaaaactttaCGTGCTTAGAATGtaataaaagttttgaaaaagaaatcaaattacaAAGACATATGCGAATACACGAACGTACGAAAGAGCAAAAAGATTCGAATTTCAAACGATTTTTGTGTCATATTTGCAGTAAAACTTTTAGACAAAATACAGGTCTTATGTTTCATATGAGAACGCATACTGGATATAAACCTCATGTTTGCAAATATTGCGGACGAGGATTTACGTCAAATTCAAATTGCATTAATCACGAAAGAACGCATACCGGTGATAGGCCATTCGTTTGTCACTTTTGTAGCGCCGCTTTTGCTAAATCTTGTACTCTCAAAGCGCATATTACTACGCATACCGGCGAAGCTAATTATCACTGCAAAACTTGCGGCAAGTCTTTCagacgattaaaatatttgaaagagcATAGATTCACGCATACAGGAGAGAAACCGTATGCCTGCAAAATATGTGGAACAGCTTATAGCCATTCTGGCAGCTTATTCGTtcacgaaaaaaaatgtaaagcccagtacaataattatcaaaCTACGACGCCGACTCAAACTACGACGCCAACTCCAAATACGCAAAGTTACGCTCAATCTCAAGGAAATGTTTGCGTTAACACACCCGTCATACCTCCTATTATTTCAACACTGCCGCAAtctcatataaataatattaatagtactTTAGGTTCTCAAGCGAATAAAACTTATATCGACAGCGTGCAAAGAATGAACGCGcacgctgctgctgctgctgctgccgcgGCTGTGGTAGGTACGTCTTCGTTGCACGTACATCCTAGTCCGGATATTCCAGATGTAGCATCGGCGGTTAGAAATATTGCTATCATAGGACAAGTATTTTActcttaa
- Protein Sequence
- MTNRDNYLCRVCLSSSNDNQPIFSIEDNSTKDKSVQDLSEKLWLCGGIEVAEDDGLPEHICIKCILKVNAAHELREQCQRADVKLRQLYGKAIKKADTVKDQYCQTEKEHFPLLTKEEDNYSLLRYQDSMSDDKTNVQILKESDSNIKTGNEILSDTDNKLERSTHEVPVVKREAYRTRRLTMFKRVTSMENLRNHKERQRQYIKKNGNTKYDNGEKDVLLNAENACNKVVRVSATRSNLNLKCTQCNRCYSSKKSLERHILTHNEAKFQCQKCNKQFFHIDELLQHGKLHRSNEKSKLVPCKICNKSFRKIDTMVRHLNVHKRVNPKEVFSILKEIRDRRKLENNVQSLEMNNRSILSLEDQNLYDRKALDNGLDDGIKKLTKQISDTEEKINHFYTSSSESNSDNKSDSFDGIPVYRCKHCIKCYTKETSLQRHLLKHDERKFVCNVCNMKFFRQDRLKSHRDRYGHDEDKDCSIPQKPPDDKLAIKLINSWIREELDSDNEGKGFPCEICGKSYDTKKSLLKHQTNTHEVQEENCFNCGKECSCAIKCKGNRKNSEKEKNFTCLECNKSFEKEIKLQRHMRIHERTKEQKDSNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNYQTTTPTQTTTPTPNTQSYAQSQGNVCVNTPVIPPIISTLPQSHINNINSTLGSQANKTYIDSVQRMNAHAAAAAAAAAVVGTSSLHVHPSPDIPDVASAVRNIAIIGQVFYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01233161;
- 90% Identity
- iTF_01234515; iTF_01233824; iTF_01235193;
- 80% Identity
- -